PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G155400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HSF | ||||||||
Protein Properties | Length: 249aa MW: 27144.8 Da PI: 8.2279 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 101 | 1.1e-31 | 22 | 114 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 F+ k++++++d++++ +++w +n+f+vld+ f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ ++ weF+h+sF +g+ + Brast01G155400.1.p 22 FVAKTFHMVSDPATDGVVRWGVASNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDS---------WEFAHESFLRGQAK 103 9********************999*****************************************998.........************** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll i rkk++ Brast01G155400.1.p 104 LLPLIVRKKKK 114 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.7E-34 | 14 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.4E-47 | 18 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.63E-29 | 19 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.7E-27 | 22 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-16 | 22 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-16 | 60 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 61 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-16 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGSECKGHQV QDDEGPGAIA PFVAKTFHMV SDPATDGVVR WGVASNTFLV LDPAAFSDFL 60 LPSYFKHRNF ASFVRQLNTY GFRKVDPDSW EFAHESFLRG QAKLLPLIVR KKKKAGGAAG 120 NRGELCEEEE EVRGTIRAVQ RLRDERKGME EELQAMDRRL RAAENRPGQM MAFLGKLADD 180 PGVVLRAMVA KKEELAAAGG KDSSSPEKRR RITGAEAEAG RGAVAGADDA AESRVVPFPF 240 SALGQVFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-25 | 15 | 111 | 13 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-25 | 15 | 111 | 22 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-25 | 15 | 111 | 22 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-25 | 15 | 111 | 22 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 211 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G155400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370538 | 0.0 | AK370538.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112D03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569736.1 | 1e-154 | heat stress transcription factor C-1b | ||||
Swissprot | Q942D6 | 1e-134 | HFC1B_ORYSJ; Heat stress transcription factor C-1b | ||||
TrEMBL | I1HR89 | 1e-152 | I1HR89_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G48990.1 | 1e-153 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11298 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 2e-58 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G155400.1.p |
Publications ? help Back to Top | |||
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