PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G147700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-PHD
Protein Properties Length: 857aa    MW: 93335.5 Da    PI: 5.3931
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G147700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-086146511552
                         HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox  15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                         L+ + ek++yps+ ++e LA++lgLt +qV+ WF   R
  Brast01G147700.1.p 614 LKLHLEKDPYPSRPTKESLAQELGLTFNQVSRWFSSAR 651
                         55566789**************************8777 PP
2PHD42.41.6e-14238293151
                         SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C++Cg+   + +++++lCdg C++ fH+kCl+++l  +++p g   wlC+ C++k
  Brast01G147700.1.p 238 FCAICGSkhVTLKNDIILCDGaCDRGFHQKCLNPPLLAQDIPPGdeGWLCPACDCK 293
                         7******65555********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.02E-14228296IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.2E-14234293IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.234236293IPR019787Zinc finger, PHD-finger
SMARTSM002491.8E-11238291IPR001965Zinc finger, PHD-type
PfamPF006281.1E-11238293IPR019787Zinc finger, PHD-finger
CDDcd155045.79E-27238290No hitNo description
PROSITE patternPS013590239290IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007111.904597657IPR001356Homeobox domain
SMARTSM003891.7E-9599661IPR001356Homeobox domain
CDDcd000866.13E-10602655No hitNo description
SuperFamilySSF466891.67E-9603656IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-10612652IPR009057Homeodomain-like
PfamPF059207.7E-7620651IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MDKTSASGLL QDNGNIGNIT ASAPAKGERG RKGSQVVTSK TYPLRSAHSS ARVLRSTSKN  60
KNRIPDEPAT PLRSAQLRST SKNKTKTPNE PVNILGPTHS STRVLRSTSK KTAKTPIEPV  120
NDNTTFQPAA RKRKRGRPSN AASPKNDHIK IRQRVRYILN RMNYEQSLIQ AYASEGWKGQ  180
SLEKIRPEKE LERAKAEILR CKLRIREAFQ NMDSLLSEGK LEESLFDSEG EISSEDIFCA  240
ICGSKHVTLK NDIILCDGAC DRGFHQKCLN PPLLAQDIPP GDEGWLCPAC DCKLDCIDVL  300
NELQGSTLSI HDSWERVFPE SALLANGSNQ IGSSDLPSDD SEDNDYNPAL AEGQMVDEKK  360
SSAEDGDEGS DSDDSDFMTS SDASELSMKK RSESKNKATV DDLGLPSDDS EDDDFDPAGP  420
VSSEDQKAKT NSEESDFTSD SDDFCAEIAK SCGQDEVSQP SSSDHADGIE ISAVDNQLGA  480
EDNSLTIMET ELDQDVVLPV SSRRQVERLD YKRLYDEAYG KETSDSSDDE EWSGDSIPSH  540
GNLDDSGTDS LGGSLQPAKI HSKRPQAGHQ NSEHTPQTGR YSVSIGQCSE VLYPNGSSST  600
SHKKHFGPII NQKLKLHLEK DPYPSRPTKE SLAQELGLTF NQVSRWFSSA RHYSRIAAAK  660
KEKHPENYTA ENGKGAADIQ QREPNGKVLE KQSVDRIDNV SEGRVAAQNN IDEGKKGDTP  720
FKQDISCEQT VVVIPTVVNK NCTTNSREVG SPSSVPGGNQ NSGTSRNAED TPLKQNTSCE  780
QTVVVSPVDN QNCTASTSNV GSPKSVPGGN KRRDSSRNIG SPRAGSAGNK IPGLEHVDEV  840
RRKAILRELR KMKSGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135ARKRKRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269|PubMed:21951842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G147700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:21951842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569804.10.0homeobox protein HAZ1
SwissprotQ8H9910.0HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBLA0A0Q3R9D70.0A0A0Q3R9D7_BRADI; Uncharacterized protein
STRINGBRADI2G49760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-80Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW
    Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.
    J Integr Plant Biol, 2011. 53(11): p. 869-78
    [PMID:21951842]