PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G139000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 770aa    MW: 82654.7 Da    PI: 6.4541
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G139000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.7e-2191146156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         r++ +++t+eq++++e++F+++++p++++r++L+++lgL+ rqVk+WFqNrR++ k
  Brast01G139000.1.p  91 RKSYHRHTAEQVRVMEAVFKESPHPDEKQRQQLSDQLGLSPRQVKFWFQNRRTQIK 146
                         788999**********************************************9877 PP
2START176.61.5e-552704981206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                         ela +a++elv++ +++ep+Wv+s     +++n+de+l+ f +++         s+ea+r+sgvv  ++++lv  ++d++ qW+e +    
  Brast01G139000.1.p 270 ELAGRALEELVTMCSSGEPLWVRSLetgrDILNYDEYLRLFGRGDDsgdqragWSVEASRESGVVYIDAMQLVHGFMDVN-QWKELFLpmi 359
                         57899************************************77766999**999**************************.***9999999 PP

                         .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECT CS
               START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksn 159
                          ka+tl+vi++g      g++ql++ae q+l+p+vp R+  f+Ry+++l a++w+ vdvS d  +      s+ +R+ + pSg++ie+  n
  Brast01G139000.1.p 360 aKASTLDVIRTGendgpdGVVQLIFAEVQMLTPMVPtRELCFARYCKKLAAEKWATVDVSFDKAEAGGMdPSPPARCWKNPSGCIIEEQTN 450
                         9****************************************************************998888999***************** PP

                         CEEEEEEEE-EE.--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 160 ghskvtwvehvd.lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         ghs+vtwveh++ +++++p++++r +  sgla+ga++wvatlq qce+
  Brast01G139000.1.p 451 GHSRVTWVEHTEiPESAVPSSMYRAVTASGLAFGARRWVATLQLQCER 498
                         ************4456677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.13E-2070149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-2477142IPR009057Homeodomain-like
SMARTSM003891.7E-1987152IPR001356Homeobox domain
PROSITE profilePS5007117.89688148IPR001356Homeobox domain
PfamPF000469.8E-1991146IPR001356Homeobox domain
CDDcd000863.98E-1991146No hitNo description
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PROSITE profilePS5084839.624261501IPR002913START domain
SuperFamilySSF559611.79E-27263498No hitNo description
CDDcd088753.38E-101265497No hitNo description
PfamPF018524.8E-45270498IPR002913START domain
SMARTSM002341.1E-52270498IPR002913START domain
Gene3DG3DSA:3.30.530.203.6E-7322481IPR023393START-like domain
SuperFamilySSF559612.06E-11520701No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MGSSRPRTKD FFAAPALSLS LAGAFGRNAP AVTSGEEVEE GDEWDGGIRG ERIIGDEVEI  60
SSENTGPGSP SADGDGEEGH GDGGNKKKRS RKSYHRHTAE QVRVMEAVFK ESPHPDEKQR  120
QQLSDQLGLS PRQVKFWFQN RRTQIKAIQE RHENSLLKSE LENVQKENRA MRELASRPSR  180
CPSCGVAATS NDDVVDAAAA RQEQQLQLEN AQLKAEIEKL RATLGKAASA DGVTSPAFSA  240
GTVLQTNSRK NPLEDYGGGL TSHDKQSILE LAGRALEELV TMCSSGEPLW VRSLETGRDI  300
LNYDEYLRLF GRGDDSGDQR AGWSVEASRE SGVVYIDAMQ LVHGFMDVNQ WKELFLPMIA  360
KASTLDVIRT GENDGPDGVV QLIFAEVQML TPMVPTRELC FARYCKKLAA EKWATVDVSF  420
DKAEAGGMDP SPPARCWKNP SGCIIEEQTN GHSRVTWVEH TEIPESAVPS SMYRAVTASG  480
LAFGARRWVA TLQLQCERMV FSVATNVPTR DSNGVSTLAG RRSVLKLAHR MTSSLCRGIG  540
GSRGLAWSRV TRAGAGDIRL TSRRSAAGEP QGLIACAVLS TWLPVGPTAL LDFLRDESRR  600
PEWDATLSGG SVQRRVNLAK GKDRGNCVTA YAATSAPAGD QQGRGKWIVQ DSSRTSSCEA  660
IVAYAAVDAA VLQPVISGHD SSGVAVLPCG FAAVPDGLEY SRPAVITSSS SSSSRKGDVA  720
AGSLLTVAFQ VLASSSPTAM LSPDSAEAVI GLVSCTLRDI RKALGCEDR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G139000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314016.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC9
SwissprotQ5JMF30.0ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A446NQ740.0A0A446NQ74_TRITD; Uncharacterized protein
STRINGBRADI2G50510.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein