PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G138700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 604aa    MW: 65739.3 Da    PI: 9.0598
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G138700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.72.3e-13154193242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         +kk CnC++skClk+YCeCfa+g++C+  C+C++C+N+ e+
  Brast01G138700.1.p 154 KKKCCNCRHSKCLKLYCECFASGVYCDG-CNCTNCFNNVEN 193
                         799*************************.********9875 PP
2TCR50.93.2e-16238277140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Brast01G138700.1.p 238 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 277
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-15153193IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.747154278IPR005172CRC domain
PfamPF036381.7E-9155190IPR005172CRC domain
SMARTSM011148.4E-20238279IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12241276IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MAGKEQGGGG AGQPPRAPIP AVSTQPPIKK LVRQLDFTSA AFAGNPAMAA AAAAVTRTMQ  60
VRTVPVGYPQ PHQLRAGLPM GVPQQLQPRG LPVMRPHQMV HVPLPRPAVA VPVPHVRPGQ  120
AQPVSRPPVA IPLRPESPKP RPRLYEGKDG TPTKKKCCNC RHSKCLKLYC ECFASGVYCD  180
GCNCTNCFNN VENEAARREA IDATLERNPD AFRPKIGSSP HANRNNMDVA GDLPLVGKHN  240
KGCHCKKSGC LKKYCECFQA NILCSENCKC MDCKNFEGSE ERNHLYLGDP KNLVHMHQVT  300
NAAVNGAIGA TSLLSPSTSR KRKQIDPLLD HPTKEHVVHR NGQLSQVIYQ KNVVAPDGSL  360
PISQSAHHNM MGPVKVTLRP LLADIIQPGD IKELCKILVT VPGEAAKAYA GRKAQEEKGA  420
EKGDSLASTN HDREEKNKDQ SHKKTSIDDL SSGGSHMGRV SVDDSRPDCT DDQKSCRPMS  480
PGTLALMCDE KDTMFATSQN AIAEPTIGVN QNRSELYAEQ ERCVLTEFRD CLRKLVQYGM  540
MKEKKFSMPI RSEPTGHPGL VNGVQRIPYS KEVDVPVVKT FPQSSSRHLV SGNPGSVHLD  600
KRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-2915828914135Protein lin-54 homolog
5fd3_B6e-2915828914135Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318323SRKRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G138700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232362.10.0protein tesmin/TSO1-like CXC 5 isoform X2
TrEMBLA0A0Q3R9W20.0A0A0Q3R9W2_BRADI; Uncharacterized protein
STRINGBRADI2G50540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-134Tesmin/TSO1-like CXC domain-containing protein