PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G130400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 25828.2 Da PI: 8.0094 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116 | 2.3e-36 | 49 | 154 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrr+Ca++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+d++++++yeA+ar+ dPvyG+vg+il+lq+q Brast01G130400.1.p 49 PCGACKFLRRRCAPGCVFAPHFsggggRERGAAQFAAVHRVFGASNVAKLLSRVPVPLRRDTARTVCYEAQARIADPVYGCVGTILALQHQ 139 7*********************8887444559*********************************************************** PP DUF260 87 leqlkaelallkeel 101 ++ l+ +l+ l+++l Brast01G130400.1.p 140 VALLQGQLSILQSQL 154 *********999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.875 | 48 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-39 | 49 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MQGGPGQPPC RKRGGAVAVT RPAVCAVPPG QQQRAEVEEE ASSAGPGAPC GACKFLRRRC 60 APGCVFAPHF SGGGGRERGA AQFAAVHRVF GASNVAKLLS RVPVPLRRDT ARTVCYEAQA 120 RIADPVYGCV GTILALQHQV ALLQGQLSIL QSQLFNYRLA FASTHPDAHH FAALQPAYSA 180 ASAPSQMVNY DELPQAVDYM DVEPQMRGLE SLQLSQPPHR EENESQDMSP FSDNVGQQRQ 240 P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 42 | 157 | 4 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 42 | 157 | 4 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G130400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567161.1 | 1e-137 | LOB domain-containing protein 20 | ||||
Refseq | XP_024315860.1 | 1e-137 | LOB domain-containing protein 20 | ||||
Refseq | XP_024315861.1 | 1e-137 | LOB domain-containing protein 20 | ||||
TrEMBL | I1HS39 | 1e-135 | I1HS39_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G51310.1 | 1e-136 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14085 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-38 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G130400.1.p |