PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G122500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 389aa    MW: 41409.9 Da    PI: 6.5082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G122500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000332783151254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A eYIk L
  Brast01G122500.1.p 278 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEANEYIKFL 315
                         677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.874266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-7276337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.59E-4276320No hitNo description
SuperFamilySSF474595.37E-10276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MADEWWSSST SQRSHGTSSC TAAPPMDTGH AAACGWTSPA AESTSSITFQ DPRRSSCTTT  60
THQPSSDAAS SLGDPHMDWT HAFLSGRSDA SFQAVLQDDM GPASTTSRPL FRAHQPAADD  120
AVMNNPFRDM SHGFSLLDQA APAAASSSPY GTALALQQGM FDAAAEAPNI SMFGECQSTA  180
SYDAQAIQLS TQMQGGGAQL QYNLSGGGYM PFGGAPLSSQ LLLQALQPKT SYSSNTLMAK  240
SAERAGSPAA RKNEPDSPAA AKRPRIEAPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD  300
TASVLHEANE YIKFLHDQVA SLTYPYLKNV NQAQQFQQKG PENAKEGGEL KKDLRSRGLC  360
LVPVATTYTV ASETMPEFWH PTFGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G122500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567189.10.0transcription factor bHLH123
TrEMBLA0A0Q3N0Q40.0A0A0Q3N0Q4_BRADI; Uncharacterized protein
STRINGMLOC_37971.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.35e-47bHLH family protein