PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G111200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 557aa    MW: 60404.9 Da    PI: 4.7849
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G111200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-164289148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT  Ed +lvd+vk++G g+W+++ +  g+ R++k+c++rw ++l
  Brast01G111200.1.p 42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 89
                        79******************************************9986 PP
2Myb_DNA-binding521.7e-1695138146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++T+eE+ l+++++ ++G++ W++ a++++ gRt++++k++w++
  Brast01G111200.1.p  95 KGAFTPEEERLIIQLHSKMGNK-WARMAAHLP-GRTDNEIKNYWNT 138
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0016937.3E-2551556IPR016310Transcription factor, GAMYB
PROSITE profilePS5129416.6253789IPR017930Myb domain
SuperFamilySSF466893.74E-3139136IPR009057Homeodomain-like
SMARTSM007172.1E-144191IPR001005SANT/Myb domain
PfamPF002491.1E-144289IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-234396IPR009057Homeodomain-like
CDDcd001672.71E-114489No hitNo description
PROSITE profilePS5129425.48290144IPR017930Myb domain
SMARTSM007173.4E-1794142IPR001005SANT/Myb domain
PfamPF002491.3E-1595138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2697142IPR009057Homeodomain-like
CDDcd001671.26E-1297138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MYRVKSESDC EMMHQDQMDS PVADDGSSGG SPHRGGGPPL KKGPWTSAED AILVDYVKKH  60
GEGNWNAVQK NTGLFRCGKS CRLRWANHLR PNLKKGAFTP EEERLIIQLH SKMGNKWARM  120
AAHLPGRTDN EIKNYWNTRI KRCQRAGLPI YPASICNQSS NEDQQGSSDF NCGDNISSDL  180
LNGNGLYLPD FTCDNFIGNS EALSYAPQLS AVSISNLLGQ SFASKNCGFM DQVNQAGMLK  240
QSDGLLPGFS DTINGTLSSV DQFSNDSEKL KHTLGFDYLH EANSSSKLIA PFFEGAITGS  300
HAFLNGNFST SRATNGPLKM ELPSLQDTES DPNSWLKYTV APAMQPTELI DPYLQSPTTP  360
SVKSECASPS RNSGLLEELV HEAEVLRSGK NQQQSVRSSS SSVSTPCDTT VVGPDFDLCQ  420
EYWEEHRSTF LSEYAPFSGN SLTEPTAPVS ASSPDVFQLS KISPAQSPSL GSGEQEMQPA  480
YQPGAGDASP YPEIFRPDAL FSGNTAGSSV FNNAIAMLLG NDMNIECKSV LGDGTVFDPS  540
SWSNMPHACQ MSEEFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-33361421106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G111200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519170.0JF951917.1 Triticum aestivum clone TaMYB34 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564452.10.0transcription factor GAMYB
SwissprotA2WW870.0GAM1_ORYSI; Transcription factor GAMYB
TrEMBLI1HSP40.0I1HSP4_BRADI; Uncharacterized protein
STRINGBRADI2G53010.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-81myb domain protein 33