PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G094700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 190aa    MW: 20513.7 Da    PI: 9.2017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G094700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00163961123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F++   L  H  +H
  Brast01G094700.1.p 39 FECKTCSRQFPTFQALGGHRASH 61
                        89**********99999998887 PP
2zf-C2H211.60.00085103125123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp Cg  F     L  H+r+H
  Brast01G094700.1.p 103 HECPVCGLEFAVGQALGGHMRRH 125
                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.8E-83761No hitNo description
PfamPF139121.4E-123863IPR007087Zinc finger, C2H2
SMARTSM003550.383961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7233966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SuperFamilySSF576678.8E-898125No hitNo description
PfamPF139123.6E-10102128IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93103130IPR007087Zinc finger, C2H2
SMARTSM003550.13103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSKRGRGVWE MDTARVLMLL AQHQQQQQEA PLAMRGRVFE CKTCSRQFPT FQALGGHRAS  60
HKRPRLLQPQ HAHGDAAALC LGRQQITLPR QQPQQMPAKP RAHECPVCGL EFAVGQALGG  120
HMRRHRAEAD APNSSCKAAA APKTTTACCD ADGGICLDLN LTPSENCAKC RSAARQGVPK  180
ALAMLDCTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G094700.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2442416e-37DQ244241.1 Zea mays clone 3770 mRNA sequence.
GenBankEU9702196e-37EU970219.1 Zea mays clone 342364 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567257.12e-96zinc finger protein ZAT12
TrEMBLI1HT764e-95I1HT76_BRADI; Uncharacterized protein
STRINGBRADI2G54470.17e-96(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.18e-28C2H2 family protein