PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G092600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 567aa    MW: 62190.9 Da    PI: 8.12
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G092600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-1564110148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT++Ede l +av+ + g++Wk+Ia+ +   Rt+ qc +rwqk+l
  Brast01G092600.1.p  64 KGGWTPQEDETLRKAVQAFKGRSWKKIAEFFT-DRTEVQCLHRWQKVL 110
                         688****************************9.************986 PP
2Myb_DNA-binding62.58.7e-20116162148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd++++++vk++G+  W+ Iar ++ gR +kqc++rw+++l
  Brast01G092600.1.p 116 KGPWTQEEDDKIIELVKEYGPTKWSVIARSLP-GRIGKQCRERWHNHL 162
                         79******************************.*************97 PP
3Myb_DNA-binding58.51.5e-18168211146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +++WT+eE+  l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
  Brast01G092600.1.p 168 KDAWTAEEERALINAHHTYGNK-WAEIAKVLP-GRTDNSIKNHWNS 211
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.28959110IPR017930Myb domain
SMARTSM007174.1E-1363112IPR001005SANT/Myb domain
PfamPF002492.8E-1464110IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-1565120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-2166122IPR009057Homeodomain-like
CDDcd001671.85E-1167110No hitNo description
PROSITE profilePS5129431.855111166IPR017930Myb domain
SuperFamilySSF466894.93E-32113209IPR009057Homeodomain-like
SMARTSM007176.2E-19115164IPR001005SANT/Myb domain
PfamPF002491.4E-18116162IPR001005SANT/Myb domain
CDDcd001671.08E-16118162No hitNo description
Gene3DG3DSA:1.10.10.606.1E-28123169IPR009057Homeodomain-like
PROSITE profilePS5129423.376167217IPR017930Myb domain
SMARTSM007171.2E-18167215IPR001005SANT/Myb domain
PfamPF002495.0E-17168211IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-25170217IPR009057Homeodomain-like
CDDcd001678.98E-15170213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MGTMAEAEHE GCVENRQPLA ASSSSVSDGS GYGVGLARMS PPVSSSVNSI SGLRRTSGPI  60
RRAKGGWTPQ EDETLRKAVQ AFKGRSWKKI AEFFTDRTEV QCLHRWQKVL NPELIKGPWT  120
QEEDDKIIEL VKEYGPTKWS VIARSLPGRI GKQCRERWHN HLNPDIKKDA WTAEEERALI  180
NAHHTYGNKW AEIAKVLPGR TDNSIKNHWN SSLRKKLDFY STSKVLAVPR LLGHDDFKDK  240
PKPVATEGHL DLNKVAIVSS KDVTETAQRS NRNHVKDCSG FLSLSILPTD QPLTSYEVSS  300
VVDGSAVTLA VQGLESDSVC DKGLEILSVH EKGLEVDSTL DTLAESGTTQ LESVPARGEE  360
PSLKNEAQSR LGPLCYQIPN MEDVAPVTSP LFSEHHTVHQ TSEHCRNVVL SPNGCTTPTK  420
GTISSQLSVD SILKSAADSF PSTPSILRRR KRDKSTPASD LRFSGLNTDS FYTPAGKRPS  480
TDTPESFKTA SFLSLGSLDR LSASVRSFDV SPPYRIRSKR MAVTKTVEKQ LDFSADELGT  540
CGSKILDSPC QGSLNTNSFT DTPMMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-72632175159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-72632175159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1448453RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G092600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232544.20.0transcription factor MYB3R-2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLI1HT970.0I1HT97_BRADI; Uncharacterized protein
STRINGBRADI2G54640.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-117myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]