PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G092400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 799aa MW: 88361.8 Da PI: 5.5173

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G092400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	387.6	1.4e-118	423	792	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL++cA+ vs +d + a++lL++++++as +gd qRla++f+++L+arla+++s++yk+++ s+ + +++l+a++l+ ++P+ k Brast01G092400.1.p 423 ETLLIHCAQSVSIDDRRSATELLKQIRQHASANGDGDQRLAHCFANGLEARLAGNGSQIYKSFTISRLA---CTDVLKAYQLYLAACPFKK 510 789**************************************************************99...9************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +sh aNq+I++ave++++vHi+D++i +G+QWp+L+q L++R++gpp+lRiTg++ p++g +e++eetg+ L+++A++++vpfef+ Brast01G092400.1.p 511 ISHYFANQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSTRAGGPPKLRITGIDTPQPGfrPAERIEETGRYLSDYAQTFKVPFEFQG- 600 **************************************************************************************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +a+++e++++e+L+++++E l+Vn++++ ++l+desv es+r+ vL+++++++P+v+++ + ++n++ F+ rf eal +ysa fd+le Brast01G092400.1.p 601 IASQFEAVQIEDLHIDKDEILIVNCMFKFKTLMDESVVAESPRNIVLNTIRKMKPHVFIHGITNGSYNAPFFVSRFREALFHYSAAFDMLE 691 7************************************************************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 a++pr++e+r +E +l++re+ nv++ceg er er et+++W+ r ++aGFk++pl+++++k a+ ++ ++++ + ++e++ +l++gWk Brast01G092400.1.p 692 ANIPRDNEQRLLIESALFNREAINVISCEGLERMERPETYKQWQTRNQRAGFKQLPLNQDIMKRAREKVKCYHKN-FIIDEDNRWLLQGWK 781 ******************************************************************99966.*********** PP GRAS 364 drpLvsvSaWr 374 +r L+++S W+ Brast01G092400.1.p 782 GRILFALSTWK 792 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.77	396	773	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-116	423	792	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence Send to blast
MVMDAALHDW CAPLPGSNSK CDGHLPICPQ IPAANGFTAE ELEALLLLPS DCLDADGFLN 60 AATASPDTAS PPRDVSASSP AAAPGQAQPD DSEGFSDIVL GYINRMLMAE DIDEKFEHYP 120 SLLAAEKPFL EILADHPPYS GGSTVDSPDG SSVTNSCNSL GSCNCAAPSS GLGQTPPFLE 180 FPTAAFLQPS QMYQDPSLES CVVDAGSSWP YDPTEFCQLQ TNPVPETLLS QSSSFASSND 240 SSVAFSDGFE PWLSTAGAVA DVCLSNFVLQ NQQAAQFSRG FEEASRFLPE ESKLVIDVES 300 LPSVASLQAG VKEEKKFVEV KTEKADAEVA VHRGKKHFYG DDLDAEEGRC CKHSAPAIID 360 TDHLVREMMD KVLLCNGETC SKGVKELREA LQHDVANHPS GAHGKGRGKK QNKQPKKEVV 420 DLETLLIHCA QSVSIDDRRS ATELLKQIRQ HASANGDGDQ RLAHCFANGL EARLAGNGSQ 480 IYKSFTISRL ACTDVLKAYQ LYLAACPFKK ISHYFANQTI MNAVEKAKKV HIVDYGIYYG 540 FQWPCLIQRL STRAGGPPKL RITGIDTPQP GFRPAERIEE TGRYLSDYAQ TFKVPFEFQG 600 IASQFEAVQI EDLHIDKDEI LIVNCMFKFK TLMDESVVAE SPRNIVLNTI RKMKPHVFIH 660 GITNGSYNAP FFVSRFREAL FHYSAAFDML EANIPRDNEQ RLLIESALFN REAINVISCE 720 GLERMERPET YKQWQTRNQR AGFKQLPLNQ DIMKRAREKV KCYHKNFIID EDNRWLLQGW 780 KGRILFALST WKPNHHSS*

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence Send to blast

MVMDAALHDW CAPLPGSNSK CDGHLPICPQ IPAANGFTAE ELEALLLLPS DCLDADGFLN  60
AATASPDTAS PPRDVSASSP AAAPGQAQPD DSEGFSDIVL GYINRMLMAE DIDEKFEHYP  120
SLLAAEKPFL EILADHPPYS GGSTVDSPDG SSVTNSCNSL GSCNCAAPSS GLGQTPPFLE  180
FPTAAFLQPS QMYQDPSLES CVVDAGSSWP YDPTEFCQLQ TNPVPETLLS QSSSFASSND  240
SSVAFSDGFE PWLSTAGAVA DVCLSNFVLQ NQQAAQFSRG FEEASRFLPE ESKLVIDVES  300
LPSVASLQAG VKEEKKFVEV KTEKADAEVA VHRGKKHFYG DDLDAEEGRC CKHSAPAIID  360
TDHLVREMMD KVLLCNGETC SKGVKELREA LQHDVANHPS GAHGKGRGKK QNKQPKKEVV  420
DLETLLIHCA QSVSIDDRRS ATELLKQIRQ HASANGDGDQ RLAHCFANGL EARLAGNGSQ  480
IYKSFTISRL ACTDVLKAYQ LYLAACPFKK ISHYFANQTI MNAVEKAKKV HIVDYGIYYG  540
FQWPCLIQRL STRAGGPPKL RITGIDTPQP GFRPAERIEE TGRYLSDYAQ TFKVPFEFQG  600
IASQFEAVQI EDLHIDKDEI LIVNCMFKFK TLMDESVVAE SPRNIVLNTI RKMKPHVFIH  660
GITNGSYNAP FFVSRFREAL FHYSAAFDML EANIPRDNEQ RLLIESALFN REAINVISCE  720
GLERMERPET YKQWQTRNQR AGFKQLPLNQ DIMKRAREKV KCYHKNFIID EDNRWLLQGW  780
KGRILFALST WKPNHHSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-50	426	792	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G092400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564590.1	0.0	scarecrow-like protein 9
TrEMBL	I1HTA2	0.0	I1HTA2_BRADI; Uncharacterized protein
STRING	BRADI2G54670.2	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12518	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-176	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast01G092400.1.p