PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast01G091100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 208aa MW: 22401.2 Da PI: 6.2467 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.3 | 2e-29 | 100 | 153 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt+eLH+rFveav++L G++ A+Pk+i++lm+v+gLt+e+v+SHLQkYRl Brast01G091100.1.p 100 KARMVWTTELHRRFVEAVAHL-GEKGAVPKAIVQLMNVDGLTRENVASHLQKYRL 153 68*******************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.18 | 97 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.53E-20 | 98 | 157 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-29 | 99 | 158 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.0E-25 | 100 | 153 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.4E-10 | 102 | 152 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MLSPRVVRPQ PHAAASEWEL GLPSAAELTP VSQPLIPPAL AAAFGIDTAG PVPSSVDARL 60 LQDSPTSHLS SRFDEYDEED EEGEGETEGA ATGGGRSGKK ARMVWTTELH RRFVEAVAHL 120 GEKGAVPKAI VQLMNVDGLT RENVASHLQK YRLYLKRLHI GGAAATPPPQ VPPPPPYYSR 180 FDAKPPQDTM NRNGVRTFIS YEKLGCD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 6e-26 | 100 | 156 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast01G091100.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-115 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567265.2 | 2e-93 | transcription factor PCL1 | ||||
Swissprot | Q94DH3 | 2e-36 | PCL1_ORYSJ; Transcription factor PCL1 | ||||
TrEMBL | A0A0Q3GJF8 | 4e-92 | A0A0Q3GJF8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G54787.1 | 4e-90 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G59570.1 | 2e-29 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast01G091100.1.p |