PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G088300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 483aa    MW: 51818.5 Da    PI: 5.9024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G088300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-17151196147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +g+W++eEd ll  +v+++G+++W++Ia+ +  gR++k+c++rw + 
  Brast01G088300.1.p 151 KGPWSPEEDALLSSLVTEHGPRNWTLIAAGIA-GRSGKSCRLRWCNQ 196
                         79******************************.***********985 PP
2Myb_DNA-binding53.45.9e-17203247147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+++T+eEd ++ +a++ +G++ W++Ia+ +  gRt++ +k++w++ 
  Brast01G088300.1.p 203 RKPFTEEEDRIIMEAHAIHGNK-WASIAKSLV-GRTDNAIKNHWNST 247
                         789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.805146197IPR017930Myb domain
SuperFamilySSF466895.39E-29150244IPR009057Homeodomain-like
SMARTSM007179.4E-15150199IPR001005SANT/Myb domain
PfamPF002491.9E-16151196IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-26152204IPR009057Homeodomain-like
CDDcd001671.55E-13153195No hitNo description
PROSITE profilePS5129427.322198252IPR017930Myb domain
SMARTSM007174.7E-16202250IPR001005SANT/Myb domain
PfamPF002493.0E-15203247IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-24205251IPR009057Homeodomain-like
CDDcd001674.41E-12205248No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MASETAISPQ PLPNPTAANS AHSSPTSPAD GTEAPAPPQL HPQPHHASPS PPPSMPGETE  60
EAPVHPQSQP HRPPPSSSSS PSTANETQTP VHPPPQPETQ QPSPSSPSMA ETQAPVQPKP  120
QPNHSSPLPS GDDGDDVVFT GTFAASGEPV KGPWSPEEDA LLSSLVTEHG PRNWTLIAAG  180
IAGRSGKSCR LRWCNQLNPN VKRKPFTEEE DRIIMEAHAI HGNKWASIAK SLVGRTDNAI  240
KNHWNSTLRR RYCPGRQCTQ GSGVEQPTGD MSRAVLEEPW PLVEHSPFNA MEVKEAPVQK  300
LSGSFDMALQ IIDNSNCSTQ DVDKPYLVPV QTLPGSSSVA LQTRDHNTCI TEVVDQPYLV  360
QPVAKVGAFR PYNQGPVQSM QKEMSSSTKS VSTLQALGAD LTCFAADVPN KCGHGCCSAE  420
ERPHNVSLLG PEFNEFEDHL PIRNSRFASL VSELSSIAWI NSTLQRSDAT NSLQHNQVSP  480
IL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-391502516107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G088300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232563.10.0transcription factor MYB1
TrEMBLA0A0Q3GJM00.0A0A0Q3GJM0_BRADI; Uncharacterized protein
STRINGBRADI2G55040.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.12e-59myb domain protein 1