PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G086200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 287aa    MW: 31308.2 Da    PI: 9.3536
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G086200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-14143187347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ l++++ k++G g+W+ I+r   + Rt+ q+ s+ qky
  Brast01G086200.1.p 143 AWTEEEHRLFLKGLKKYGRGDWRNISRSYVTSRTPTQVASHAQKY 187
                         7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.4823287IPR017884SANT domain
SMARTSM007173.9E-43385IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-83588IPR009057Homeodomain-like
CDDcd001672.54E-43682No hitNo description
Gene3DG3DSA:1.10.10.607.8E-12135189IPR009057Homeodomain-like
PROSITE profilePS5129421.36136192IPR017930Myb domain
SuperFamilySSF466897.18E-17138192IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-18139190IPR006447Myb domain, plants
SMARTSM007174.9E-13140190IPR001005SANT/Myb domain
CDDcd001679.27E-12143188No hitNo description
PfamPF002497.4E-12143187IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMAEAWMDVL LPPAPYFSAQ PCGWFAQADR RGASGAWTAE ENKVFEEALA AIDLGAPEGW  60
EMVALMLPEK TVAQVVSHFR ALEKDVGFIE AGLVPFPRYD HDASSPSPAG FTLDWDGGGA  120
FRRGYFLRRG AGRADKERKK GVAWTEEEHR LFLKGLKKYG RGDWRNISRS YVTSRTPTQV  180
ASHAQKYFNR LSSSGGGKGD GKRRASIHDI TIVSLRDEDD GGHGSGGPVD AKPSLSPPSL  240
GRHRHFLPPA GISGHHPHGS VKLERQSSFM SGSTRLDLLQ MQCGHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-122899273RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G086200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564630.11e-153transcription factor DIVARICATA
SwissprotQ8S9H71e-60DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0Q3IY631e-152A0A0Q3IY63_BRADI; Uncharacterized protein
STRINGBRADI2G55217.11e-152(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-62MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]