PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G082700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 374aa    MW: 40375.4 Da    PI: 7.2218
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G082700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05212231120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ C+k F+r  n++ H+
  Brast01G082700.1.p 212 FVCHVCDKKFNRYNNMQMHM 231
                         89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.6E-5208235No hitNo description
Gene3DG3DSA:3.30.160.607.8E-5212231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.993212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
SuperFamilySSF576678.29E-5282318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGLRTCSAME GEVVAASPFI EWLKPPSSSS SSSPSSSTFS SSSSSTASRH EGHARAEEAR  60
GGAEEDGGSS SMACLPLLRM LEEGKAKAGD REHTVKEEIL SSTAGASGSV QLGPGVDLNI  120
GLPVGDACAD STIELGEEGE EEEEEEWNPT AHGGCKVEGE EKEEHGEAVE GSAHNLSMGD  180
FVGVTAAESG VAMSCRYWIP TPAQILVGPV QFVCHVCDKK FNRYNNMQMH MWGHGREYRK  240
GPESLKGTHS ATLALLKLPC YCCAAGCKSN VAHPRARPLK DFRTLQTHYK RKHGAKPFCC  300
RRCAKPFAVK GDWRTHEKNC GKRWFCACGS DFKHKRSLND HVRSFGAHHF PVVVEAAAAA  360
APKAEDRIIR FQR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G082700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643340.0AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564660.10.0protein TRANSPARENT TESTA 1
TrEMBLI1HTK60.0I1HTK6_BRADI; Uncharacterized protein
STRINGBRADI2G55540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.15e-88C2H2-like zinc finger protein