PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G080400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 27756.9 Da PI: 5.67 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.4 | 4.6e-43 | 8 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppG+rF Pt+eel+++yL++k+++++ ++e+vi+ vd+y+v+Pw+L + +e + w++F+ r++++a+g r++r+t sgyWka Brast01G080400.1.p 8 LPPGYRFYPTEEELICFYLRNKLDSRRDDIERVIPVVDVYSVDPWQLSEiharlcGGGSEGEPWFYFCARQEREARGGRPSRTTPSGYWKA 98 79****************************99***************8445655422336679**************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+ +++ +g++kt+vfy+grap+g+kt+W m+eyr+ Brast01G080400.1.p 99 AGTPGVVYPVsGRRPIGMRKTMVFYRGRAPSGTKTKWKMNEYRA 142 *****9998757888***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-48 | 3 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.918 | 8 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-23 | 9 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MMADGVQLPP GYRFYPTEEE LICFYLRNKL DSRRDDIERV IPVVDVYSVD PWQLSEIHAR 60 LCGGGSEGEP WFYFCARQER EARGGRPSRT TPSGYWKAAG TPGVVYPVSG RRPIGMRKTM 120 VFYRGRAPSG TKTKWKMNEY RALQHHHEED DAHARAGAPA VAPASQLRSE FSLCRLYTKS 180 GTLRQFDRRP LAAAADNPGP STAAAVSPDD DDGSGGSMQP HEEAELMEGG GGDPYGDDVA 240 TLAALLYWPE D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-30 | 6 | 185 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-30 | 6 | 185 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-30 | 6 | 185 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-30 | 6 | 185 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-30 | 6 | 185 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-30 | 6 | 185 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G080400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071274 | 1e-140 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567294.1 | 1e-145 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 3e-61 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | I1HTN2 | 1e-144 | I1HTN2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G55780.1 | 1e-144 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 7e-63 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G080400.1.p |
Publications ? help Back to Top | |||
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