PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G063400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 396aa MW: 42737.5 Da PI: 9.0589 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160 | 9.2e-50 | 32 | 157 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +pGfrFhPt+eel+ +yL++kvegk++++ + i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + Brast01G063400.1.p 32 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-DLITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMI 121 79***************************.99***************888889************************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ +glkktLvfy+g+apkg++++W+m+eyrl Brast01G063400.1.p 122 RAESSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 157 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.21 | 31 | 178 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.94E-56 | 31 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-24 | 33 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MSRYEGGGGH GAAALGGGGG TKEDAHEQDL VMPGFRFHPT EEELIEFYLR RKVEGKRFNV 60 DLITFLDLYR YDPWELPAMA AIGEKEWFFY VPRDRKYRNG DRPNRVTASG YWKATGADRM 120 IRAESSRPIG LKKTLVFYSG KAPKGVRSSW IMNEYRLPTA DTHRYHKTEI SLCRVYKRTG 180 IDDGHASSRS TPSSRAATAA RHDNNSNNNN NKQLQQAAGN SSSTSTTPTP PPTPSKLHLL 240 QQGSPECTSQ PLLGYLQQSA AGDHHEQQGA LLQYQQQQYS GTGKSSTSGG AFASTSYSLL 300 SLVNAASVGA AGGASAAAID ELSFSTLVGG SQPAAAAYHG SSQLHHDHFV VPLPTTAPQL 360 PMSLAAISEK MIWDWNPIPD AAAGTRDYGG AGIFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-54 | 19 | 178 | 5 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-54 | 19 | 178 | 5 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-54 | 19 | 178 | 5 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-54 | 19 | 178 | 5 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-54 | 19 | 178 | 8 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-54 | 19 | 178 | 8 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-54 | 19 | 178 | 8 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-54 | 19 | 178 | 8 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-54 | 19 | 178 | 8 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-54 | 19 | 178 | 8 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-54 | 19 | 178 | 8 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-54 | 19 | 178 | 8 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-54 | 19 | 178 | 5 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-54 | 19 | 178 | 5 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G063400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR819762 | 0.0 | FR819762.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC012 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232667.1 | 0.0 | NAC domain-containing protein 35 isoform X1 | ||||
TrEMBL | I1HU42 | 0.0 | I1HU42_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G57297.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-101 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G063400.1.p |