PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G062300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 451aa    MW: 47072.2 Da    PI: 6.1405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G062300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000791113123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C + F++      H+r+H
  Brast01G062300.1.p  91 FPCPICLREFRSVRAVSGHMRMH 113
                         89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01191113IPR015880Zinc finger, C2H2-like
PfamPF138940.001691113No hitNo description
PROSITE profilePS501579.74391118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM003550.78274298IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280276298IPR007087Zinc finger, C2H2
PfamPF139124.6E-4281299IPR007087Zinc finger, C2H2
PfamPF139120.0014326350IPR007087Zinc finger, C2H2
SMARTSM003559.9326348IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704326353IPR007087Zinc finger, C2H2
PROSITE patternPS000280328348IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSRSSPPPRR RDDLEEGEIA TDSGSDSPRD DDGDRRPEIQ GRRLEQRTLV AGGGQVDALP  60
SPTPSSECDS DGTVSDVVVG GALGRTTEQL FPCPICLREF RSVRAVSGHM RMHDPQERQG  120
RPAAPAIAGG WAVRGRRGFV GGRSASPEDE EVVDSMALAV GEPVVDPVPF ALASRSNSVE  180
PDPNPNVSST ANAAAAAAQN PPNPNEVAVH PSCSPQFVAH NQPPEANQVV VLGARPQPVV  240
DQRAPATPPQ FTANQPAPPP PARSPPVRDE QGWWVCKLEG CAKRFHTYQG LGGHMAGHKN  300
RQTSEAAAAG VGYAGAAASA RPARMHSCNI CGVEYDAGTK LGGHKRKHYS GKVIPTKRAA  360
REPQALVSAG ELAVALSSAV QESSQASMAM EGPELQLALP SEAPVPAPEP ASSIRIFGVT  420
MTPHVQSPAA TSSTVMETDQ SSGETSTNTQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G062300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233570.11e-132SH3 domain-containing protein C23A1.17
TrEMBLA0A2K2DGE70.0A0A2K2DGE7_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.13e-10C2H2-like zinc finger protein