PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G051800.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 312aa    MW: 33917.9 Da    PI: 8.6545
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G051800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05284307123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y C+ C+++F++++ L+ H ++ H
  Brast01G051800.2.p 284 YFCNSCNRTFNSSMGLEDHSKMkH 307
                         78*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.053284311IPR007087Zinc finger, C2H2
PROSITE patternPS000280286307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MQDLRFWGVV VKPGETLKCD PGESHYHISQ IVLEANNTKE NVEVFVNVGG RRIMLGTLSV  60
DKHPQVLTDQ VFGKEFELAH SSMTSNICFT GYQFKIMKRS NSSTKEGDDS DEEVPLAIPL  120
DCNTDDYKNN QATHGVSKLT APRPADAPSC IPKAAVQETN SREETEGDHK DKTCAQDPSD  180
DNDSKGSDQD MDHTPKKMKG NKRPAETPLK TPSAKKTNIA SPTVGKKTGS AAGKKSGYVH  240
VATPYPAKQA RKISEHVHVA TPHPAKHARK TPGNSDKSKQ SAGYFCNSCN RTFNSSMGLE  300
DHSKMKHGAA K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G051800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567378.10.0histone deacetylase HDT2 isoform X3
TrEMBLI1HUF10.0I1HUF1_BRADI; Uncharacterized protein
STRINGBRADI2G58250.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-18histone deacetylase 2C