PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G051800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 317aa MW: 34377.3 Da PI: 8.4785 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.8e-05 | 289 | 312 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+++F++++ L+ H ++ H Brast01G051800.1.p 289 YFCNSCNRTFNSSMGLEDHSKMkH 312 78*****************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.053 | 289 | 316 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 291 | 312 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009294 | Biological Process | DNA mediated transformation | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010162 | Biological Process | seed dormancy process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0005774 | Cellular Component | vacuolar membrane | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MQDLRFWGVV VKPGETLKCD PGESHYHISQ IVLEANNTKE NVEVFVNVGG RRIMLGTLSV 60 DKHPQVLTDQ VFGKEFELAH SSMTSNICFT GYQFKIMKRS NSSTKEASDV SGDDSDEEVP 120 LAIPLDCNTD DYKNNQATHG VSKLTAPRPA DAPSCIPKAA VQETNSREET EGDHKDKTCA 180 QDPSDDNDSK GSDQDMDHTP KKMKGNKRPA ETPLKTPSAK KTNIASPTVG KKTGSAAGKK 240 SGYVHVATPY PAKQARKISE HVHVATPHPA KHARKTPGNS DKSKQSAGYF CNSCNRTFNS 300 SMGLEDHSKM KHGAAK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G051800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024315869.1 | 0.0 | histone deacetylase HDT2 isoform X1 | ||||
TrEMBL | I1HUF1 | 0.0 | I1HUF1_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G58250.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11173 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 3e-18 | histone deacetylase 2C |
Link Out ? help Back to Top | |
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Phytozome | Brast01G051800.1.p |