PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G051700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 300aa    MW: 31876.7 Da    PI: 4.2698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G051700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091277298323
                         ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                         C+ C+k+F +   Lk+H +  H
  Brast01G051700.1.p 277 CKSCSKTFGSDVALKSHEKAkH 298
                         *****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.221275299IPR007087Zinc finger, C2H2
PROSITE patternPS000280277298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTMFKFWGVE VKPGQTVTCD SPAHIIHVTQ VALVETKKGS GNVVVSTKID DQKVIIGTLS  60
AENHPQILCD LKFQKKIELS HNSKTASVFV CGYQTFMPEI DPDSSEDEDE VQAVNNQVIN  120
NVGGIHEVTA PAKDSNKGTD GNGSDDDSDD VLLDLSSSGD DELTGDDSSS EEDGTTSEED  180
DTTSEVDDTS SEEVDTSSEE DDTSSEESSS DEEDEETLKE PVISKKRVAA TALKVPASDK  240
KAKIATPSAQ KTAKQAKMPA NSKPKKSPKS TGGTVACKSC SKTFGSDVAL KSHEKAKHE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G051700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232717.11e-127histone deacetylase HDT2 isoform X2
TrEMBLA0A0Q3JF621e-126A0A0Q3JF62_BRADI; Uncharacterized protein
STRINGTraes_3B_6B78FC95F.29e-66(Triticum aestivum)
STRINGTRIUR3_01234-P16e-66(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.28e-21histone deacetylase 3