PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G047000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 471aa    MW: 49803 Da    PI: 6.1929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G047000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09275322455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Brast01G047000.1.p 275 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 322
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.12E-10269326No hitNo description
SuperFamilySSF474591.31E-16269340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16273339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6275322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MNCGPPEQLP PPPATAPSCF LNLNWDQSMD APAAPHLDPA LGSMVSSPAA SNSTAATEGL  60
ALHGISPHYG GTPPPKLDLS MMGQQFHHHH YPPPQAGGGL PTLENLMPMA SLDQFLADPG  120
FAERAARLSG FGGPGPGQFG LPDDGPIGAL KELELGSARD ESSVSDPASE MPLKGAPDGN  180
ARKRKAGGGK GKGKDSSMST SAKDLLAKED SAAKRCKSME ESNGAEENCA KGKAAQSSSE  240
NGGKKQGKDA CASKLPEPPK DYIHVRARRG EATDSHSLAE RVRREKISQR MKLLQDLVPG  300
CNKVVGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPQLD FNNLPNLLAK DMQQSCGQLQ  360
SSHFPLEASG APLPYMSQPH QGGNNPLGCG LTDGMDDQGS MHPLDPAFCR PMSSHHHFLN  420
GVSDAASQVG AFWQDLQSVV QMDMGQSQEI ATSSNSYDGS LQTVHMKMEL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G047000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564914.10.0transcription factor bHLH77 isoform X2
TrEMBLI1HUJ30.0I1HUJ3_BRADI; Uncharacterized protein
STRINGBRADI2G58630.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-60bHLH family protein