PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G040800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 834aa    MW: 93655.1 Da    PI: 6.9974
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G040800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11581.9e-49141284117
                CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                         + k+rwlk+ e+++iL+nfe + ++++++++p+sgs++L+nr+++r+fr+DGy+w++k++gkt  E+he LKv++v +l+cyYa++++n+t
  Brast01G040800.1.p  14 SvKTRWLKPPEVLKILQNFELFPVQHKPPQKPPSGSWFLFNRRVLRNFRNDGYEWRRKRNGKTFAEAHEYLKVDNVRALNCYYAQADKNST 104
                         4599*************************************************************************************** PP

                CG-1  94 fqrrcywlLeeelekivlvhylev 117
                         fq+r+yw+Le ++e+ivlvhy+++
  Brast01G040800.1.p 105 FQKRIYWMLEPAYEHIVLVHYRDT 128
                         *********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143769.2038134IPR005559CG-1 DNA-binding domain
SMARTSM010763.2E-5711129IPR005559CG-1 DNA-binding domain
PfamPF038592.0E-4515127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.5E-6304389IPR013783Immunoglobulin-like fold
CDDcd001021.06E-5304389No hitNo description
SuperFamilySSF812963.27E-13305388IPR014756Immunoglobulin E-set
PfamPF018333.3E-4305386IPR002909IPT domain
PfamPF136371.3E-8512563No hitNo description
SuperFamilySSF484032.02E-14512604IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.9E-15513607IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.698514574IPR020683Ankyrin repeat-containing domain
CDDcd002049.96E-9514559No hitNo description
SMARTSM002489.4E-4542571IPR002110Ankyrin repeat
PROSITE profilePS5008811.354542574IPR002110Ankyrin repeat
SMARTSM00015190663685IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.705664693IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.35E-6667748IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.011698720IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748699728IPR000048IQ motif, EF-hand binding site
PfamPF006120.0098701720IPR000048IQ motif, EF-hand binding site
SMARTSM000150.22721743IPR000048IQ motif, EF-hand binding site
PfamPF006120.011723743IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.359723750IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MQQQGLDMQK LQQSVKTRWL KPPEVLKILQ NFELFPVQHK PPQKPPSGSW FLFNRRVLRN  60
FRNDGYEWRR KRNGKTFAEA HEYLKVDNVR ALNCYYAQAD KNSTFQKRIY WMLEPAYEHI  120
VLVHYRDTLE GSISVSVLND SPTSNQNGSA SRADAYGSPG LTSELIAQRH NSCSPGSAEE  180
VSSQIATINN ETTNTSQFDW LRALEMQLSL ENKERHDANT EEVLPNDDPI PVHEICNEEP  240
DTCTNHVDIF NGLKSIEDNH AEGSHLYPNP IDVLKNSDTW LDEDQLESIL HSAPVLVNES  300
QWFHIHEVCP EWAFCSDSTK VVIAGDFLCN PSNSSWAILF GDAEVPVENV QEGVIRCHTP  360
HLGAGKVRMC MIDENKKPCS ESREFEFVEK PIKSAIDGNG KSCREAREFE LQQKPGVSGD  420
GLSLLLNYVQ MLFDGHGCGL FSKFRLPLPD VQCGFQVNPS DIINRTCEKL DHESTVNCVM  480
EVMLNNKFED WLSSKSEQHS EGNYLLPKQY HGVIHTIAAL GYSWALKPLL SSGVPINYRD  540
ANGWTALHWA ARFGREEMVV VLLASGAAAG ALSDPTSEDP VAKTPASIAS AYGFKGLSAF  600
LSEAQLTTHL HSLESKENGN PIDHTHGEGI SNAVVGISDK CAHVDGGTDD QLALKDSLGA  660
IRNAVQAAGR IQATFRVFSL KKKHKMALRE AGAASRAMLD KAAMSIQKNF RCWKKRKEFQ  720
KVRKYVVKIQ ARVRAHQERK KYKELLQSVG ILEKVMLRWF RKGVGLRGFN TTAMPIDEDE  780
GEDIAKVFRK ERVETAVNEA VLRVSAIVGC PIARLQYRRM LEMHQQAKHA HEK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G040800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564956.10.0calmodulin-binding transcription activator 4 isoform X1
TrEMBLA0A0Q3RDK60.0A0A0Q3RDK6_BRADI; Uncharacterized protein
STRINGBRADI2G59137.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-109Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains