PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast01G040300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 151aa MW: 16986.8 Da PI: 11.6442 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.9 | 1.7e-25 | 96 | 145 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr+g++KKA+EL LCdaeva+++fs+ g+lyeyss Brast01G040300.1.p 96 RIEDRTSRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGRLYEYSS 145 8***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-32 | 87 | 146 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.114 | 87 | 147 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.49E-33 | 88 | 147 | No hit | No description |
PRINTS | PR00404 | 7.0E-27 | 89 | 109 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-25 | 89 | 147 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.2E-25 | 96 | 143 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-27 | 109 | 124 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-27 | 124 | 145 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence Send to blast |
MAMFQIPRVK KSFCSIENLI GKKTDFLLEL GGPPRSAPRP SLLSDPLARP TLRWSAPFLL 60 SSLACHARVR EGERRSSDGG RRCVRMARRG RVELRRIEDR TSRQVRFSKR RAGLFKKAFE 120 LALLCDAEVA LLVFSPAGRL YEYSSSSRCS * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-16 | 89 | 147 | 3 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-16 | 89 | 147 | 3 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-16 | 89 | 147 | 3 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-16 | 89 | 147 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-16 | 89 | 147 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-16 | 89 | 147 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-16 | 89 | 147 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-16 | 89 | 147 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-16 | 89 | 147 | 3 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-16 | 89 | 147 | 3 | 61 | Myocyte-specific enhancer factor 2B |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast01G040300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF469334 | 2e-85 | KF469334.1 Brachypodium distachyon MADS-box transcription factor 40 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11880.1 | 4e-24 | AGAMOUS-like 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast01G040300.1.p |