PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G037200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 325aa    MW: 35209.2 Da    PI: 5.2054
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G037200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.91.7e-2025100173
            trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                         rWt++e+l+Li+a+r +e+r  +   g+    +W+ vs ++r++g+er+p qC+++w nl+++ kki ++ekk++ 
  Brast01G037200.1.p  25 RWTRHETLVLIQAKRATEQRAAAaagGQPVRLKWAVVSGYCRRHGVERGPMQCRKRWGNLSWDLKKILAWEKKKAT 100
                         8********************98443467899****************************************9743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.5161885IPR017877Myb-like domain
PfamPF138378.2E-1025101No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSANGDSLSP AAMAGATTPR SRLPRWTRHE TLVLIQAKRA TEQRAAAAAG GQPVRLKWAV  60
VSGYCRRHGV ERGPMQCRKR WGNLSWDLKK ILAWEKKKAT KTMMEQEEEE EEGKKEEGQD  120
QDQDGPSSSR PSFWEMRGEQ RRARQLPSSF DREVYDALVG AAAAVKLPPA ESGEEMELDE  180
DDDDDDDDGH QQPMPIPARM PPPPVLVMPI SARMYVPPAS SQHECSDPAT ESAKKPGSDK  240
NSTSQQDSEA TFGAGVGGEG TATAAGTSVI GRQVTEALER GNRVLAEQLE AQRASSAADR  300
EHRAALLAAV TRLADAVSRI ADKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G037200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126096e-69CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567424.31e-163trihelix transcription factor ASR3
TrEMBLA0A0Q3N3R91e-155A0A0Q3N3R9_BRADI; Uncharacterized protein
STRINGMLOC_61814.11e-135(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-27Trihelix family protein