PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G031100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HB-other | ||||||||
Protein Properties | Length: 1162aa MW: 127470 Da PI: 7.3529 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.8 | 6.7e-07 | 71 | 127 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++++++ F+ + ++ ++e +e+++ +g+t +qV+ +F +R++ +k Brast01G031100.1.p 71 KKPRDLLNPKAVKIMQSIFALKDNIGKRETREISALCGVTVTQVREFFASQRTRVRK 127 799***************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.102 | 68 | 128 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-4 | 70 | 132 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.80E-5 | 71 | 127 | No hit | No description |
Pfam | PF00046 | 1.9E-4 | 71 | 127 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-6 | 71 | 134 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.7E-7 | 71 | 131 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1162 aa Download sequence Send to blast |
MDLVPFKPVA GALAKAVGGG SIPAMVAAQQ EQLHAQVDQL QRLVVAQCRL TGVNPLAQEM 60 AAGALSIKIG KKPRDLLNPK AVKIMQSIFA LKDNIGKRET REISALCGVT VTQVREFFAS 120 QRTRVRKVVR LSREKALKIE PSEATDSVCS MSTEQTPVDI EAHAQLVEPL RTLEPLEMSQ 180 SSSQLVEVPQ NSLQQAEVQQ SYATPTTHSG TMQPTDGKIN PDLAQKETKP EEVAAGVESE 240 DKKFLESIFA RMRKEETFSG QVKLMEWILQ INNVTILGWF LTMGGLPIVS TWLSQAATEE 300 QTTVILVIFK VLLHLPLHKA LPAHMSAVLQ TINRLRFYRT QDISSRARNL LSRLSKVLVR 360 SQASKKPQKD LICKQRISEI LRDESWRSEV DITDEILALT EGASESRKPE PRKTPLLLTA 420 SADEPYKKSS VQPRSKERRK VLFVEHPNRK ATGNNVHSVR SISTNSSRPL SADDIQKAKM 480 RAMFMQEKYG KRDTGKGTDK SEMVEIQKPS GLVNSDVLPM PRSPPMSTTK QPVEPSPSTS 540 KQNTVPLPDK PEIPVSPKLN ITPRENSREK LDSKRVIWQI PPEVWIDPSW TVSAGENSKE 600 LDVQTQRNRR EKETFYASLN DIPLNPKDPW DLEMDFDDSL TPEIPIDQPS DAGIMEVDNV 660 GAAPSNICFP DENNYAGSTS SSTVAAGANG AAAEPDLELL AVLLKNPQLV FALSSNQMGT 720 LPNEQTVALL DMLKQTGLGL PELVNGLANG TGVPKASEPG PEAIPTSLPS PTPPEDLPAS 780 ASWRSEFPTQ VRASNLQQAH LPSRGNTSLV ASTMHQSFSN VVSPLPSQPY TSISASPAHI 840 QTNILSSPQL AVSVNALNQH VAPVNDLLNG PVVHRHAQSY ALASDAAVGA IQQHPAVNKP 900 AHEFQNISNP ALAPAWQSSA ANLASTGRNT TPEPWASHTT NSFNDASMPY LNQSAYSNQS 960 TQSPYNAYAS TSVSSQGLDR NGYTRTAEYQ VSGCDTHQRH SLSPEPGAAR VYGGTQAYIP 1020 EPLNVGNYGQ QSYNPETSRD WRSGQQSHAA AEPSSQWSSI QQSYPPAEPS RQWSSGQQSY 1080 VPPEASTQWS SGQQNYNQSD ISRQWSSAQQ TYTRAEPSRP SWNTANQGQV PDTSRQWSLR 1140 NQDYYNPNDG RSSYDQRQRR R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G031100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232788.1 | 0.0 | homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A0Q3RDX0 | 0.0 | A0A0Q3RDX0_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G59937.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8043 | 30 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-154 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G031100.1.p |