PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G031100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 1162aa MW: 127470 Da PI: 7.3529

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G031100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.8	6.7e-07	71	127	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++++++ F+ + ++ ++e +e+++ +g+t +qV+ +F +R++ +k Brast01G031100.1.p 71 KKPRDLLNPKAVKIMQSIFALKDNIGKRETREISALCGVTVTQVREFFASQRTRVRK 127 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.102	68	128	IPR001356	Homeobox domain
SMART	SM00389	2.1E-4	70	132	IPR001356	Homeobox domain
CDD	cd00086	3.80E-5	71	127	No hit	No description
Pfam	PF00046	1.9E-4	71	127	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.7E-6	71	134	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-7	71	131	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1162 aa Download sequence Send to blast
MDLVPFKPVA GALAKAVGGG SIPAMVAAQQ EQLHAQVDQL QRLVVAQCRL TGVNPLAQEM 60 AAGALSIKIG KKPRDLLNPK AVKIMQSIFA LKDNIGKRET REISALCGVT VTQVREFFAS 120 QRTRVRKVVR LSREKALKIE PSEATDSVCS MSTEQTPVDI EAHAQLVEPL RTLEPLEMSQ 180 SSSQLVEVPQ NSLQQAEVQQ SYATPTTHSG TMQPTDGKIN PDLAQKETKP EEVAAGVESE 240 DKKFLESIFA RMRKEETFSG QVKLMEWILQ INNVTILGWF LTMGGLPIVS TWLSQAATEE 300 QTTVILVIFK VLLHLPLHKA LPAHMSAVLQ TINRLRFYRT QDISSRARNL LSRLSKVLVR 360 SQASKKPQKD LICKQRISEI LRDESWRSEV DITDEILALT EGASESRKPE PRKTPLLLTA 420 SADEPYKKSS VQPRSKERRK VLFVEHPNRK ATGNNVHSVR SISTNSSRPL SADDIQKAKM 480 RAMFMQEKYG KRDTGKGTDK SEMVEIQKPS GLVNSDVLPM PRSPPMSTTK QPVEPSPSTS 540 KQNTVPLPDK PEIPVSPKLN ITPRENSREK LDSKRVIWQI PPEVWIDPSW TVSAGENSKE 600 LDVQTQRNRR EKETFYASLN DIPLNPKDPW DLEMDFDDSL TPEIPIDQPS DAGIMEVDNV 660 GAAPSNICFP DENNYAGSTS SSTVAAGANG AAAEPDLELL AVLLKNPQLV FALSSNQMGT 720 LPNEQTVALL DMLKQTGLGL PELVNGLANG TGVPKASEPG PEAIPTSLPS PTPPEDLPAS 780 ASWRSEFPTQ VRASNLQQAH LPSRGNTSLV ASTMHQSFSN VVSPLPSQPY TSISASPAHI 840 QTNILSSPQL AVSVNALNQH VAPVNDLLNG PVVHRHAQSY ALASDAAVGA IQQHPAVNKP 900 AHEFQNISNP ALAPAWQSSA ANLASTGRNT TPEPWASHTT NSFNDASMPY LNQSAYSNQS 960 TQSPYNAYAS TSVSSQGLDR NGYTRTAEYQ VSGCDTHQRH SLSPEPGAAR VYGGTQAYIP 1020 EPLNVGNYGQ QSYNPETSRD WRSGQQSHAA AEPSSQWSSI QQSYPPAEPS RQWSSGQQSY 1080 VPPEASTQWS SGQQNYNQSD ISRQWSSAQQ TYTRAEPSRP SWNTANQGQV PDTSRQWSLR 1140 NQDYYNPNDG RSSYDQRQRR R*

Sequence ? help Back to Top

Protein Sequence Length: 1162 aa Download sequence Send to blast

MDLVPFKPVA GALAKAVGGG SIPAMVAAQQ EQLHAQVDQL QRLVVAQCRL TGVNPLAQEM  60
AAGALSIKIG KKPRDLLNPK AVKIMQSIFA LKDNIGKRET REISALCGVT VTQVREFFAS  120
QRTRVRKVVR LSREKALKIE PSEATDSVCS MSTEQTPVDI EAHAQLVEPL RTLEPLEMSQ  180
SSSQLVEVPQ NSLQQAEVQQ SYATPTTHSG TMQPTDGKIN PDLAQKETKP EEVAAGVESE  240
DKKFLESIFA RMRKEETFSG QVKLMEWILQ INNVTILGWF LTMGGLPIVS TWLSQAATEE  300
QTTVILVIFK VLLHLPLHKA LPAHMSAVLQ TINRLRFYRT QDISSRARNL LSRLSKVLVR  360
SQASKKPQKD LICKQRISEI LRDESWRSEV DITDEILALT EGASESRKPE PRKTPLLLTA  420
SADEPYKKSS VQPRSKERRK VLFVEHPNRK ATGNNVHSVR SISTNSSRPL SADDIQKAKM  480
RAMFMQEKYG KRDTGKGTDK SEMVEIQKPS GLVNSDVLPM PRSPPMSTTK QPVEPSPSTS  540
KQNTVPLPDK PEIPVSPKLN ITPRENSREK LDSKRVIWQI PPEVWIDPSW TVSAGENSKE  600
LDVQTQRNRR EKETFYASLN DIPLNPKDPW DLEMDFDDSL TPEIPIDQPS DAGIMEVDNV  660
GAAPSNICFP DENNYAGSTS SSTVAAGANG AAAEPDLELL AVLLKNPQLV FALSSNQMGT  720
LPNEQTVALL DMLKQTGLGL PELVNGLANG TGVPKASEPG PEAIPTSLPS PTPPEDLPAS  780
ASWRSEFPTQ VRASNLQQAH LPSRGNTSLV ASTMHQSFSN VVSPLPSQPY TSISASPAHI  840
QTNILSSPQL AVSVNALNQH VAPVNDLLNG PVVHRHAQSY ALASDAAVGA IQQHPAVNKP  900
AHEFQNISNP ALAPAWQSSA ANLASTGRNT TPEPWASHTT NSFNDASMPY LNQSAYSNQS  960
TQSPYNAYAS TSVSSQGLDR NGYTRTAEYQ VSGCDTHQRH SLSPEPGAAR VYGGTQAYIP  1020
EPLNVGNYGQ QSYNPETSRD WRSGQQSHAA AEPSSQWSSI QQSYPPAEPS RQWSSGQQSY  1080
VPPEASTQWS SGQQNYNQSD ISRQWSSAQQ TYTRAEPSRP SWNTANQGQV PDTSRQWSLR  1140
NQDYYNPNDG RSSYDQRQRR R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G031100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010232788.1	0.0	homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0Q3RDX0	0.0	A0A0Q3RDX0_BRADI; Uncharacterized protein
STRING	BRADI2G59937.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-154	HB-other family protein

Link Out ? help Back to Top
Phytozome	Brast01G031100.1.p