PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G030300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 505aa MW: 53140.9 Da PI: 8.021 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.6e-05 | 119 | 141 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Brast01G030300.1.p 119 FVCEICHKGFQRDQNLQLHRRGH 141 89*******************88 PP | |||||||
2 | zf-C2H2 | 11 | 0.0014 | 204 | 226 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk++ +s+ k H +++ Brast01G030300.1.p 204 WRCERCGKRYAVHSDWKAHSKLC 226 58*****************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.6E-5 | 118 | 141 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.21E-7 | 118 | 141 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 119 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.046 | 119 | 141 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 121 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 95 | 169 | 199 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-4 | 192 | 224 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.21E-7 | 199 | 224 | No hit | No description |
SMART | SM00355 | 160 | 204 | 224 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MCACMSGCKA YASCVSPMAC GGAGASFSSA SNTGEAVPGP GGEFRVPYHG KLFLSSPDDM 60 GDLRHIAAGN SNEEPEKPPS TALPVAKKMK KKRSLPGTPD PSAEVIALSP TTLMATNRFV 120 CEICHKGFQR DQNLQLHRRG HNLPWKLRQR GSGSSSGSGE GLSPRKRAYV CPEPSCVHHD 180 PRRALGDLTG IKKHFSRKHG EKKWRCERCG KRYAVHSDWK AHSKLCGSRE YRCHCGTLFS 240 RRDSFVTHRA FCDALAQENS KAARPLNMAT VASALQGHGH LQADDDVDMD DGSGFGADTK 300 SPHLKMFSAA AAAEEEEDLN PLGCMLSSLG GAPSPATAAF AGSSKLSLLG LSGPSDSSSM 360 GFSPAGLASM SATALLQKAA QMGATTSSGY GVGLGSTMAG LACLPNPSPF EPIRPLGPYD 420 GLPLRGASVV GFDVGGLMPG QLYSDEAHDI GAMTRAVRSM TNGESQLEPR QAEEDGRVVD 480 YMGVQNQTAF SGVSPFAHHS DPWA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-29 | 200 | 261 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-29 | 200 | 261 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G030300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567443.3 | 0.0 | protein indeterminate-domain 2 | ||||
Swissprot | Q9SCQ6 | 6e-99 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A0Q3GLR8 | 0.0 | A0A0Q3GLR8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G60020.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12554 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-97 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G030300.1.p |
Publications ? help Back to Top | |||
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