PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G030300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 505aa    MW: 53140.9 Da    PI: 8.021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G030300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05119141123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Brast01G030300.1.p 119 FVCEICHKGFQRDQNLQLHRRGH 141
                         89*******************88 PP
2zf-C2H2110.0014204226123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cgk++  +s+ k H +++
  Brast01G030300.1.p 204 WRCERCGKRYAVHSDWKAHSKLC 226
                         58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.6E-5118141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.21E-7118141No hitNo description
PROSITE profilePS5015710.637119141IPR007087Zinc finger, C2H2
SMARTSM003550.046119141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
SMARTSM0035595169199IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4192224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.21E-7199224No hitNo description
SMARTSM00355160204224IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MCACMSGCKA YASCVSPMAC GGAGASFSSA SNTGEAVPGP GGEFRVPYHG KLFLSSPDDM  60
GDLRHIAAGN SNEEPEKPPS TALPVAKKMK KKRSLPGTPD PSAEVIALSP TTLMATNRFV  120
CEICHKGFQR DQNLQLHRRG HNLPWKLRQR GSGSSSGSGE GLSPRKRAYV CPEPSCVHHD  180
PRRALGDLTG IKKHFSRKHG EKKWRCERCG KRYAVHSDWK AHSKLCGSRE YRCHCGTLFS  240
RRDSFVTHRA FCDALAQENS KAARPLNMAT VASALQGHGH LQADDDVDMD DGSGFGADTK  300
SPHLKMFSAA AAAEEEEDLN PLGCMLSSLG GAPSPATAAF AGSSKLSLLG LSGPSDSSSM  360
GFSPAGLASM SATALLQKAA QMGATTSSGY GVGLGSTMAG LACLPNPSPF EPIRPLGPYD  420
GLPLRGASVV GFDVGGLMPG QLYSDEAHDI GAMTRAVRSM TNGESQLEPR QAEEDGRVVD  480
YMGVQNQTAF SGVSPFAHHS DPWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-29200261364Zinc finger protein JACKDAW
5b3h_F3e-29200261364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G030300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567443.30.0protein indeterminate-domain 2
SwissprotQ9SCQ66e-99IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0Q3GLR80.0A0A0Q3GLR8_BRADI; Uncharacterized protein
STRINGBRADI2G60020.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-97indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]