PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G030100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NF-YB | ||||||||
Protein Properties | Length: 123aa MW: 13345 Da PI: 10.3748 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 108 | 5.9e-34 | 1 | 79 | 17 | 95 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 mk +lPa+ak+sk ake +qec++ef++fvt+eas++c+re+rkt++gdd+++a+ +lG+++y++++ yl+++re+e+ Brast01G030100.1.p 1 MKGALPAEAKVSKRAKEAIQECATEFVAFVTGEASQRCRRERRKTVSGDDVCHAMRSLGLDHYAAAMARYLQRHREAEE 79 899*************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.0E-32 | 1 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.8E-15 | 1 | 55 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.59E-24 | 1 | 92 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 4.3E-11 | 19 | 37 | No hit | No description |
PRINTS | PR00615 | 4.3E-11 | 38 | 56 | No hit | No description |
PRINTS | PR00615 | 4.3E-11 | 57 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MKGALPAEAK VSKRAKEAIQ ECATEFVAFV TGEASQRCRR ERRKTVSGDD VCHAMRSLGL 60 DHYAAAMARY LQRHREAEEL AAQINGRSGG FGQQIDVRAQ LSSVSSRSRA PGSSETKHLG 120 RN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 6e-28 | 1 | 76 | 17 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 6e-28 | 1 | 76 | 17 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G030100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024315117.1 | 6e-62 | nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | O82248 | 4e-32 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | I1HUZ2 | 1e-60 | I1HUZ2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G60030.1 | 2e-61 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2917 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 3e-34 | nuclear factor Y, subunit B5 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G030100.1.p |
Publications ? help Back to Top | |||
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