PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G024300.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 824aa MW: 91876.5 Da PI: 8.0672 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.6 | 4.6e-13 | 109 | 184 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +v+p f +++ g+ ++le ++g+ ++v + + k ++++l++GW+ Fv+an+++e+ ++F++ g+s+f v++f++ Brast01G024300.6.p 109 HSVVIPEYFGRDILGS------IKLEAPNGNIYDVGV--TVKMNTTLLQSGWRAFVDANQIEENYCLMFRYRGTSQF--EVTIFDS 184 6689999999999654......9**************..99999***************************999999..9999986 PP | |||||||
2 | B3 | 46.6 | 5.9e-15 | 729 | 820 | 11 | 99 |
HHTT-EE--HHH.HTT.....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 11 lksgrlvlpkkfaeeh.....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 ++s+ ++++ ae++ gg+ ++++ l l ++r+W+ +l r++ +r+ l +GW F+++n+L+egD ++F++ + ++ ++vv Brast01G024300.6.p 729 FSSR--YISRYLAEKYgkglpGGEMRRTISLFLLReGKSRTWSCQL--RRTCDRTRLDNGWPLFARDNHLQEGDLCLFEVLTNeEQLKMVV 815 4444..788888888899999777777777777773677*******..*******************************77666******* PP EEE-S CS B3 95 kvfrk 99 ++r+ Brast01G024300.6.p 816 YIIRR 820 **997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.138 | 96 | 185 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.77E-12 | 98 | 183 | No hit | No description |
SuperFamily | SSF101936 | 8.04E-14 | 98 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0035 | 99 | 185 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-10 | 109 | 184 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-13 | 110 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-11 | 245 | 336 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-10 | 247 | 351 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.94E-8 | 250 | 350 | No hit | No description |
PROSITE profile | PS50863 | 6.879 | 252 | 353 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.058 | 252 | 355 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-12 | 445 | 548 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-13 | 445 | 544 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.74E-11 | 450 | 549 | No hit | No description |
PROSITE profile | PS50863 | 7.613 | 451 | 554 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-7 | 452 | 537 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0024 | 452 | 554 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-12 | 703 | 823 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-14 | 704 | 822 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.25E-11 | 707 | 819 | No hit | No description |
SMART | SM01019 | 3.0E-6 | 720 | 821 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-13 | 728 | 820 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.476 | 758 | 821 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 824 aa Download sequence Send to blast |
MRRCEGDQGA SLAPRQEGGR SAGEDGDSPC RGQKRTEVPA AVGESRAPAH AAAGILLCSC 60 RLQHRPIRVL HRSFKLLTLL KDVSKMSNPC KGCQSKIRFI RHMNGNYMHS VVIPEYFGRD 120 ILGSIKLEAP NGNIYDVGVT VKMNTTLLQS GWRAFVDANQ IEENYCLMFR YRGTSQFEVT 180 IFDSNGEGSD STAYSSKELA ENNPSLDDSM ESVDLQVLSN YYVLSGLCDL TEEQLTKLHA 240 LVGKIKPEIP VLVVLMKKSN VNQNCTLIIR KDYAREYFPP KNTTIILQLP GKSNHWNCKF 300 YIRPSGMSDA GRCNLCMANF VRDNHVRKGD IFLLQPITKV KGPIFTVTVH LLHKASIDGA 360 TDQSSAGEGS DSDGCPKESS CCYRKSAQWS ATAYSSDELS ESNPSLDDSV ESDDLQMLSN 420 GYVLSVQCNL TEAQLSKLHA LVGKIKPEIP VFVVLMKKSN VKKYTLIICK DYARKYFPRE 480 NTKIILQLPK KGKHWNCKLY IKPSGRSDAG RWNLSMGNFV RDNHVREGDI FLLQPVANII 540 GRIFTVTVHL LHKASIDSSP ERRTDIGLNH RCASTKMAST ARVKEEPTTD GEETSSSGNG 600 EHGSSDNSEE DSEPRSLINH GCASTKMGST ARVKEEPTID GTAARVKEEP TIDAEEISSS 660 GHGEHGFSDN FEEASEPRFL PLDTSCLTQA QEKKMMEKVE AIGSELPIYF KVINKSAACF 720 YKPTPNLVFS SRYISRYLAE KYGKGLPGGE MRRTISLFLL REGKSRTWSC QLRRTCDRTR 780 LDNGWPLFAR DNHLQEGDLC LFEVLTNEEQ LKMVVYIIRR DKC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G024300.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014754675.1 | 0.0 | B3 domain-containing protein Os03g0620400 isoform X2 | ||||
TrEMBL | A0A0Q3GK70 | 0.0 | A0A0Q3GK70_BRADI; Uncharacterized protein | ||||
TrEMBL | A0A0Q3GK82 | 0.0 | A0A0Q3GK82_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G60554.1 | 1e-175 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G024300.6.p |