PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G024300.4.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 826aa    MW: 91576 Da    PI: 8.1782
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G024300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.6e-131091841499
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + +v+p  f +++ g+      ++le ++g+ ++v +  + k ++++l++GW+ Fv+an+++e+  ++F++ g+s+f   v++f++
  Brast01G024300.4.p 109 HSVVIPEYFGRDILGS------IKLEAPNGNIYDVGV--TVKMNTTLLQSGWRAFVDANQIEENYCLMFRYRGTSQF--EVTIFDS 184
                         6689999999999654......9**************..99999***************************999999..9999986 PP
2B346.66e-157318221199
                         HHTT-EE--HHH.HTT.....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                  B3  11 lksgrlvlpkkfaeeh.....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                         ++s+  ++++  ae++     gg+ ++++ l l    ++r+W+ +l  r++ +r+ l +GW  F+++n+L+egD ++F++  + ++ ++vv
  Brast01G024300.4.p 731 FSSR--YISRYLAEKYgkglpGGEMRRTISLFLLReGKSRTWSCQL--RRTCDRTRLDNGWPLFARDNHLQEGDLCLFEVLTNeEQLKMVV 817
                         4444..788888888899999777777777777773677*******..*******************************77666******* PP

                         EEE-S CS
                  B3  95 kvfrk 99 
                          ++r+
  Brast01G024300.4.p 818 YIIRR 822
                         **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.13896185IPR003340B3 DNA binding domain
CDDcd100172.78E-1298183No hitNo description
SuperFamilySSF1019368.24E-1498185IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.003599185IPR003340B3 DNA binding domain
PfamPF023621.6E-10109184IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-13110186IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-11272363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-10274378IPR015300DNA-binding pseudobarrel domain
CDDcd100172.95E-8277377No hitNo description
PROSITE profilePS508636.879279380IPR003340B3 DNA binding domain
SMARTSM010190.058279382IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-8472533IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-8473531IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-12705825IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-14706824IPR015300DNA-binding pseudobarrel domain
CDDcd100174.27E-11709821No hitNo description
SMARTSM010193.0E-6722823IPR003340B3 DNA binding domain
PfamPF023624.6E-13730822IPR003340B3 DNA binding domain
PROSITE profilePS5086311.476760823IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MRRCEGDQGA SLAPRQEGGR SAGEDGDSPC RGQKRTEVPA AVGESRAPAH AAAGILLCSC  60
RLQHRPIRVL HRSFKLLTLL KDVSKMSNPC KGCQSKIRFI RHMNGNYMHS VVIPEYFGRD  120
ILGSIKLEAP NGNIYDVGVT VKMNTTLLQS GWRAFVDANQ IEENYCLMFR YRGTSQFEVT  180
IFDSNGKEKV PCRASMGSDN SSSSRDGAKS SAGEGSDSTA YSSKELAENN PSLDDSMESV  240
DLQVLSNYYV LSGLCDLTEE QLTKLHALVG KIKPEIPVLV VLMKKSNVNQ NCTLIIRKDY  300
AREYFPPKNT TIILQLPGKS NHWNCKFYIR PSGMSDAGRC NLCMANFVRD NHVRKGDIFL  360
LQPITKVKGP IFTVTVHLLH KASIDGATDQ SSAGEGSDSD GCPKESSCCY RKSAQWSATA  420
YSSDELSAES NPSLDDSVES DDLQMLSNGY VLSVQCNLTE AQLSKLHALV GKIKPEIPVF  480
VVLMKKSNVK KYTLIICKDY ARKYFPRENT KIILQLPKKG KHWNCKLYIK PSGRSDAVAN  540
IIGRIFTVTV HLLHKASIDS SPERRTDIGL NHRCASTKMA STARVKEEPT TDGEETSSSG  600
NGEHGSSDNS EEDSEPRSLI NHGCASTKMG STARVKEEPT IDGTAARVKE EPTIDAEEIS  660
SSGHGEHGFS DNFEEASEPR FLPLDTSCLT QAQEKKMMEK VEAIGSELPI YFKVINKSAA  720
CFYKPTPNLV FSSRYISRYL AEKYGKGLPG GEMRRTISLF LLREGKSRTW SCQLRRTCDR  780
TRLDNGWPLF ARDNHLQEGD LCLFEVLTNE EQLKMVVYII RRDKC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G024300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754675.10.0B3 domain-containing protein Os03g0620400 isoform X2
TrEMBLA0A0Q3GK820.0A0A0Q3GK82_BRADI; Uncharacterized protein
STRINGBRADI2G60554.11e-151(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-14B3 family protein