PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G024300.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 851aa    MW: 94558.4 Da    PI: 8.1795
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G024300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.54.8e-131091841499
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + +v+p  f +++ g+      ++le ++g+ ++v +  + k ++++l++GW+ Fv+an+++e+  ++F++ g+s+f   v++f++
  Brast01G024300.3.p 109 HSVVIPEYFGRDILGS------IKLEAPNGNIYDVGV--TVKMNTTLLQSGWRAFVDANQIEENYCLMFRYRGTSQF--EVTIFDS 184
                         6689999999999654......9**************..99999***************************999999..9999986 PP
2B346.66.2e-157568471199
                         HHTT-EE--HHH.HTT.....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                  B3  11 lksgrlvlpkkfaeeh.....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                         ++s+  ++++  ae++     gg+ ++++ l l    ++r+W+ +l  r++ +r+ l +GW  F+++n+L+egD ++F++  + ++ ++vv
  Brast01G024300.3.p 756 FSSR--YISRYLAEKYgkglpGGEMRRTISLFLLReGKSRTWSCQL--RRTCDRTRLDNGWPLFARDNHLQEGDLCLFEVLTNeEQLKMVV 842
                         4444..788888888899999777777777777773677*******..*******************************77666******* PP

                         EEE-S CS
                  B3  95 kvfrk 99 
                          ++r+
  Brast01G024300.3.p 843 YIIRR 847
                         **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.13896185IPR003340B3 DNA binding domain
CDDcd100172.90E-1298183No hitNo description
SuperFamilySSF1019368.44E-1498185IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.003599185IPR003340B3 DNA binding domain
PfamPF023621.7E-10109184IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-13110186IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-11272363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-10274378IPR015300DNA-binding pseudobarrel domain
CDDcd100173.06E-8277377No hitNo description
PROSITE profilePS508636.879279380IPR003340B3 DNA binding domain
SMARTSM010190.058279382IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-13472571IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-12472575IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-11477576No hitNo description
PROSITE profilePS508637.613478581IPR003340B3 DNA binding domain
SMARTSM010190.0024479581IPR003340B3 DNA binding domain
PfamPF023621.1E-7479564IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-12730850IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-14731849IPR015300DNA-binding pseudobarrel domain
CDDcd100174.45E-11734846No hitNo description
SMARTSM010193.0E-6747848IPR003340B3 DNA binding domain
PfamPF023624.8E-13755847IPR003340B3 DNA binding domain
PROSITE profilePS5086311.476785848IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MRRCEGDQGA SLAPRQEGGR SAGEDGDSPC RGQKRTEVPA AVGESRAPAH AAAGILLCSC  60
RLQHRPIRVL HRSFKLLTLL KDVSKMSNPC KGCQSKIRFI RHMNGNYMHS VVIPEYFGRD  120
ILGSIKLEAP NGNIYDVGVT VKMNTTLLQS GWRAFVDANQ IEENYCLMFR YRGTSQFEVT  180
IFDSNGKEKV PCRASMGSDN SSSSRDGAKS SAGEGSDSTA YSSKELAENN PSLDDSMESV  240
DLQVLSNYYV LSGLCDLTEE QLTKLHALVG KIKPEIPVLV VLMKKSNVNQ NCTLIIRKDY  300
AREYFPPKNT TIILQLPGKS NHWNCKFYIR PSGMSDAGRC NLCMANFVRD NHVRKGDIFL  360
LQPITKVKGP IFTVTVHLLH KASIDGATDQ SSAGEGSDSD GCPKESSCCY RKSAQWSATA  420
YSSDELSESN PSLDDSVESD DLQMLSNGYV LSVQCNLTEA QLSKLHALVG KIKPEIPVFV  480
VLMKKSNVKK YTLIICKDYA RKYFPRENTK IILQLPKKGK HWNCKLYIKP SGRSDAGRWN  540
LSMGNFVRDN HVREGDIFLL QPVANIIGRI FTVTVHLLHK ASIDSSPERR TDIGLNHRCA  600
STKMASTARV KEEPTTDGEE TSSSGNGEHG SSDNSEEDSE PRSLINHGCA STKMGSTARV  660
KEEPTIDGTA ARVKEEPTID AEEISSSGHG EHGFSDNFEE ASEPRFLPLD TSCLTQAQEK  720
KMMEKVEAIG SELPIYFKVI NKSAACFYKP TPNLVFSSRY ISRYLAEKYG KGLPGGEMRR  780
TISLFLLREG KSRTWSCQLR RTCDRTRLDN GWPLFARDNH LQEGDLCLFE VLTNEEQLKM  840
VVYIIRRDKC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G024300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754675.10.0B3 domain-containing protein Os03g0620400 isoform X2
TrEMBLA0A0Q3GK700.0A0A0Q3GK70_BRADI; Uncharacterized protein
TrEMBLA0A0Q3GK820.0A0A0Q3GK82_BRADI; Uncharacterized protein
STRINGBRADI2G60554.11e-175(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-14B3 family protein