PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G024300.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 766aa    MW: 85443.9 Da    PI: 7.7731
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G024300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.2e-1324991499
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        + +v+p  f +++ g+      ++le ++g+ ++v +  + k ++++l++GW+ Fv+an+++e+  ++F++ g+s+f   v++f++
  Brast01G024300.2.p 24 HSVVIPEYFGRDILGS------IKLEAPNGNIYDVGV--TVKMNTTLLQSGWRAFVDANQIEENYCLMFRYRGTSQF--EVTIFDS 99
                        6689999999999654......9**************..99999***************************999999..9999986 PP
2B346.85.4e-156717621199
                         HHTT-EE--HHH.HTT.....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                  B3  11 lksgrlvlpkkfaeeh.....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                         ++s+  ++++  ae++     gg+ ++++ l l    ++r+W+ +l  r++ +r+ l +GW  F+++n+L+egD ++F++  + ++ ++vv
  Brast01G024300.2.p 671 FSSR--YISRYLAEKYgkglpGGEMRRTISLFLLReGKSRTWSCQL--RRTCDRTRLDNGWPLFARDNHLQEGDLCLFEVLTNeEQLKMVV 757
                         4444..788888888899999777777777777773677*******..*******************************77666******* PP

                         EEE-S CS
                  B3  95 kvfrk 99 
                          ++r+
  Brast01G024300.2.p 758 YIIRR 762
                         **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.13811100IPR003340B3 DNA binding domain
CDDcd100172.48E-121398No hitNo description
SuperFamilySSF1019367.26E-1413100IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.003514100IPR003340B3 DNA binding domain
PfamPF023621.5E-102499IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-1325101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-11187278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-10189293IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-8192292No hitNo description
PROSITE profilePS508636.879194295IPR003340B3 DNA binding domain
SMARTSM010190.058194297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.4E-13387490IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-14387486IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-11392491No hitNo description
PROSITE profilePS508637.613393496IPR003340B3 DNA binding domain
PfamPF023629.7E-8394479IPR003340B3 DNA binding domain
SMARTSM010190.0024394496IPR003340B3 DNA binding domain
SuperFamilySSF1019361.92E-12645765IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-14646764IPR015300DNA-binding pseudobarrel domain
CDDcd100173.82E-11649761No hitNo description
SMARTSM010193.0E-6662763IPR003340B3 DNA binding domain
PfamPF023624.1E-13670762IPR003340B3 DNA binding domain
PROSITE profilePS5086311.476700763IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MSNPCKGCQS KIRFIRHMNG NYMHSVVIPE YFGRDILGSI KLEAPNGNIY DVGVTVKMNT  60
TLLQSGWRAF VDANQIEENY CLMFRYRGTS QFEVTIFDSN GKEKVPCRAS MGSDNSSSSR  120
DGAKSSAGEG SDSTAYSSKE LAENNPSLDD SMESVDLQVL SNYYVLSGLC DLTEEQLTKL  180
HALVGKIKPE IPVLVVLMKK SNVNQNCTLI IRKDYAREYF PPKNTTIILQ LPGKSNHWNC  240
KFYIRPSGMS DAGRCNLCMA NFVRDNHVRK GDIFLLQPIT KVKGPIFTVT VHLLHKASID  300
GATDQSSAGE GSDSDGCPKE SSCCYRKSAQ WSATAYSSDE LSESNPSLDD SVESDDLQML  360
SNGYVLSVQC NLTEAQLSKL HALVGKIKPE IPVFVVLMKK SNVKKYTLII CKDYARKYFP  420
RENTKIILQL PKKGKHWNCK LYIKPSGRSD AGRWNLSMGN FVRDNHVREG DIFLLQPVAN  480
IIGRIFTVTV HLLHKASIDS SPERRTDIGL NHRCASTKMA STARVKEEPT TDGEETSSSG  540
NGEHGSSDNS EEDSEPRSLI NHGCASTKMG STARVKEEPT IDGTAARVKE EPTIDAEEIS  600
SSGHGEHGFS DNFEEASEPR FLPLDTSCLT QAQEKKMMEK VEAIGSELPI YFKVINKSAA  660
CFYKPTPNLV FSSRYISRYL AEKYGKGLPG GEMRRTISLF LLREGKSRTW SCQLRRTCDR  720
TRLDNGWPLF ARDNHLQEGD LCLFEVLTNE EQLKMVVYII RRDKC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G024300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754675.10.0B3 domain-containing protein Os03g0620400 isoform X2
TrEMBLA0A0Q3GK700.0A0A0Q3GK70_BRADI; Uncharacterized protein
TrEMBLA0A0Q3GK820.0A0A0Q3GK82_BRADI; Uncharacterized protein
STRINGBRADI2G60554.11e-176(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-14B3 family protein