PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G024300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 852aa MW: 94629.4 Da PI: 8.1795 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.5 | 4.8e-13 | 109 | 184 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +v+p f +++ g+ ++le ++g+ ++v + + k ++++l++GW+ Fv+an+++e+ ++F++ g+s+f v++f++ Brast01G024300.1.p 109 HSVVIPEYFGRDILGS------IKLEAPNGNIYDVGV--TVKMNTTLLQSGWRAFVDANQIEENYCLMFRYRGTSQF--EVTIFDS 184 6689999999999654......9**************..99999***************************999999..9999986 PP | |||||||
2 | B3 | 46.6 | 6.2e-15 | 757 | 848 | 11 | 99 |
HHTT-EE--HHH.HTT.....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 11 lksgrlvlpkkfaeeh.....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 ++s+ ++++ ae++ gg+ ++++ l l ++r+W+ +l r++ +r+ l +GW F+++n+L+egD ++F++ + ++ ++vv Brast01G024300.1.p 757 FSSR--YISRYLAEKYgkglpGGEMRRTISLFLLReGKSRTWSCQL--RRTCDRTRLDNGWPLFARDNHLQEGDLCLFEVLTNeEQLKMVV 843 4444..788888888899999777777777777773677*******..*******************************77666******* PP EEE-S CS B3 95 kvfrk 99 ++r+ Brast01G024300.1.p 844 YIIRR 848 **997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.138 | 96 | 185 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.90E-12 | 98 | 183 | No hit | No description |
SuperFamily | SSF101936 | 8.44E-14 | 98 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0035 | 99 | 185 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-10 | 109 | 184 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-13 | 110 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-11 | 272 | 363 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-10 | 274 | 378 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.07E-8 | 277 | 377 | No hit | No description |
PROSITE profile | PS50863 | 6.879 | 279 | 380 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.058 | 279 | 382 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-12 | 473 | 576 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.06E-13 | 473 | 572 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.82E-11 | 478 | 577 | No hit | No description |
PROSITE profile | PS50863 | 7.613 | 479 | 582 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-7 | 480 | 565 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0024 | 480 | 582 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-12 | 731 | 851 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-14 | 732 | 850 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.46E-11 | 735 | 847 | No hit | No description |
SMART | SM01019 | 3.0E-6 | 748 | 849 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-13 | 756 | 848 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.476 | 786 | 849 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 852 aa Download sequence Send to blast |
MRRCEGDQGA SLAPRQEGGR SAGEDGDSPC RGQKRTEVPA AVGESRAPAH AAAGILLCSC 60 RLQHRPIRVL HRSFKLLTLL KDVSKMSNPC KGCQSKIRFI RHMNGNYMHS VVIPEYFGRD 120 ILGSIKLEAP NGNIYDVGVT VKMNTTLLQS GWRAFVDANQ IEENYCLMFR YRGTSQFEVT 180 IFDSNGKEKV PCRASMGSDN SSSSRDGAKS SAGEGSDSTA YSSKELAENN PSLDDSMESV 240 DLQVLSNYYV LSGLCDLTEE QLTKLHALVG KIKPEIPVLV VLMKKSNVNQ NCTLIIRKDY 300 AREYFPPKNT TIILQLPGKS NHWNCKFYIR PSGMSDAGRC NLCMANFVRD NHVRKGDIFL 360 LQPITKVKGP IFTVTVHLLH KASIDGATDQ SSAGEGSDSD GCPKESSCCY RKSAQWSATA 420 YSSDELSAES NPSLDDSVES DDLQMLSNGY VLSVQCNLTE AQLSKLHALV GKIKPEIPVF 480 VVLMKKSNVK KYTLIICKDY ARKYFPRENT KIILQLPKKG KHWNCKLYIK PSGRSDAGRW 540 NLSMGNFVRD NHVREGDIFL LQPVANIIGR IFTVTVHLLH KASIDSSPER RTDIGLNHRC 600 ASTKMASTAR VKEEPTTDGE ETSSSGNGEH GSSDNSEEDS EPRSLINHGC ASTKMGSTAR 660 VKEEPTIDGT AARVKEEPTI DAEEISSSGH GEHGFSDNFE EASEPRFLPL DTSCLTQAQE 720 KKMMEKVEAI GSELPIYFKV INKSAACFYK PTPNLVFSSR YISRYLAEKY GKGLPGGEMR 780 RTISLFLLRE GKSRTWSCQL RRTCDRTRLD NGWPLFARDN HLQEGDLCLF EVLTNEEQLK 840 MVVYIIRRDK C* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G024300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014754674.1 | 0.0 | B3 domain-containing protein Os03g0620400 isoform X1 | ||||
Refseq | XP_014754676.1 | 0.0 | B3 domain-containing protein Os03g0620400 isoform X3 | ||||
TrEMBL | A0A0Q3GM22 | 0.0 | A0A0Q3GM22_BRADI; Uncharacterized protein | ||||
TrEMBL | A0A0Q3JGJ9 | 0.0 | A0A0Q3JGJ9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G60554.1 | 1e-174 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 5e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G024300.1.p |