PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G019500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 229aa    MW: 24176.5 Da    PI: 7.4508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G019500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.8e-1465117155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+++hn+ Er RR+++N+ ++ Lr+llP a   + kKls   ++ ++ +YI +Lq
  Brast01G019500.1.p  65 RKMSHNAYERDRRKQLNELYSSLRSLLPDA--DHTKKLSIPITVSRVLKYIPELQ 117
                         799**************************7..35666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-1662133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.9164116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-1265132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.52E-1365120No hitNo description
PfamPF000102.6E-1165117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-970122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGHQLFVDDP FASSISSLEA EGIFSGAGGP SPQWPGGGDL SAMAPAANTS SGGGYDGSPG  60
GGGGRKMSHN AYERDRRKQL NELYSSLRSL LPDADHTKKL SIPITVSRVL KYIPELQKEV  120
DGLERKKEEL TRANCKPGVI AMKDQNVAPV VSATCLDDKD IMVQVSLLSG MAAVLPLSTC  180
IKVLENEGLR LVSSSTSAFG NRTFYNLHLQ VIGTASTSST SVCMKPFL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G019500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565095.11e-122protein IRON-RELATED TRANSCRIPTION FACTOR 2
SwissprotA2WZ602e-84IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLI1HVA71e-121I1HVA7_BRADI; Uncharacterized protein
STRINGBRADI2G61050.11e-121(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.18e-34bHLH family protein