PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G018000.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SRS | ||||||||
Protein Properties | Length: 339aa MW: 34440.7 Da PI: 7.6914 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 219.4 | 7.9e-68 | 111 | 273 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstk 90 t++C+dCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa++rr+rq+++ + ++a+as+ a+a+sk++r ++q+++s+t+ Brast01G018000.3.p 111 STTTCEDCGNQAKKDCGHNRCRTCCKSRGFDCSTHVKSTWVPASRRRDRQHHHPLLGASASASSpsaaAAATSKKPRL--LSSQATTSHTS 199 5789*********************************************99987665555555445336666666665..58899999999 PP DUF702 91 lssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s+a+++++++tss lP++v+++avf+cvrv+s+ddge+e+aYq++v+i+GhvfkG+LydqG+++ Brast01G018000.3.p 200 TSNATTPRSFDTSSshqdasfreqLPRQVRAPAVFKCVRVTSIDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 273 ************999********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 7.3E-63 | 112 | 272 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.7E-26 | 114 | 156 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.1E-29 | 224 | 271 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MAADVGMVVV APAASFHHTH HHHHHHEAAA AAAAAAAGAG GDSIFPLLSA GVLDPDAAKS 60 AAASGGGIQF WSSQPQPPQS PSGGNPNPSL GASFYLKKPL PMLDTGGGGG STTTCEDCGN 120 QAKKDCGHNR CRTCCKSRGF DCSTHVKSTW VPASRRRDRQ HHHPLLGASA SASSPSAAAA 180 ATSKKPRLLS SQATTSHTST SNATTPRSFD TSSSHQDASF REQLPRQVRA PAVFKCVRVT 240 SIDDGEDEYA YQATVTINGH VFKGFLYDQG VDDGRASNDD SAAAAGVPNI SELHLGGASG 300 SGAAARSASM VPSDMFGGSG GGGHHMLGGS GYGNNTMN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G018000.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232833.1 | 1e-148 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
Swissprot | Q94CK9 | 2e-63 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | I1HVB4 | 1e-147 | I1HVB4_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G61120.1 | 1e-148 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 5e-55 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Brast01G018000.3.p |
Publications ? help Back to Top | |||
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