PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast01G007000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 281aa MW: 29382.5 Da PI: 8.4255 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.3 | 4e-29 | 130 | 183 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr++W+p+LH+rFv++v++L G++ A+Pkti++lm+v+gLt+e+v+SHLQkYRl Brast01G007000.1.p 130 RPRMVWNPQLHKRFVDVVAHL-GIKSAVPKTIMQLMNVEGLTRENVASHLQKYRL 183 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.48E-18 | 127 | 187 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-29 | 127 | 188 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.407 | 127 | 186 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.9E-23 | 131 | 183 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-7 | 132 | 182 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MGEEAGGGYD YGFLEGGGGE YARVTEWETG LPGSDELTPL SQPLVPPGLA AAFRIPPEPG 60 RTLLDVHRAS SATVSRLRSS SSSSSGNNGR GGGGSFPSFP SGGHGGGSDT GADSAAAAAA 120 ASELEKTSKR PRMVWNPQLH KRFVDVVAHL GIKSAVPKTI MQLMNVEGLT RENVASHLQK 180 YRLYVKRMQG LSNEGPSPSD HIFASTPVPP SLREPRVPSA AMAPATIYHH PMGGMTGGYY 240 QPQQQHGGHA VYNGYGGGGP GSYSQYHHGD QNADCSGKRW * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 8e-34 | 130 | 186 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00014 | PBM | Transfer from AT3G46640 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast01G007000.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-110 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. | |||
GenBank | KF769444 | 1e-110 | KF769444.1 Triticum aestivum cultivar Chinese Spring LUX-B gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565161.1 | 1e-134 | transcription factor PCL1 | ||||
Swissprot | Q94DH3 | 4e-85 | PCL1_ORYSJ; Transcription factor PCL1 | ||||
TrEMBL | I1HVM5 | 1e-132 | I1HVM5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G62067.1 | 1e-133 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46640.2 | 2e-49 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast01G007000.1.p |