PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G006600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 387aa    MW: 40997.3 Da    PI: 5.0958
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G006600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31149205258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+e+ +++ +tYeg H h
  Brast01G006600.1.p 149 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSTEEADTLLVTYEGLHLH 205
                         8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-28142206IPR003657WRKY domain
PROSITE profilePS5081126.704143208IPR003657WRKY domain
SuperFamilySSF1182901.57E-25146206IPR003657WRKY domain
SMARTSM007745.3E-35148207IPR003657WRKY domain
PfamPF031062.2E-24149205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEDYWQDDFG FGQELMMREL LDEAAAAAPS PSPSPVGAAG AAAAGYSPYS SKDDEEEEEE  60
DHFRSAARRR PEQSSSMVNK LISAVYSGPT LSDIESALSF SGASAAAEPL ADGRKYSSTP  120
VVFSPEKMMS KMENKYTMKI KTCGNGLADD GYKWRKYGQK SIKNSPNPRS YYRCTNPRCN  180
AKKQVERSTE EADTLLVTYE GLHLHYTYSH FLQAHHHPAQ PQPQAQAAAA GSKKPKLHSA  240
ADVTTTPAAT ATTPTSPPPS MAAVVPPSAA AAGDSGRFMP WSSAVPNNCS YNFFDGGDIV  300
VLAGDAEEDQ GRMATSIING GSGLLEDMVP LLVRRPSSAG NDSAATTTTT TNSSSASTMG  360
SPSASSSVSW NPASPYIDMA ILSNIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-191472051371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G006600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332403e-68BT033240.1 Zea mays full-length cDNA clone ZM_BFb0071M13 mRNA, complete cds.
GenBankBT0624333e-68BT062433.1 Zea mays full-length cDNA clone ZM_BFb0296J15 mRNA, complete cds.
GenBankKJ7275733e-68KJ727573.1 Zea mays clone pUT5433 WRKY transcription factor (WRKY120) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754265.11e-169WRKY transcription factor SUSIBA2
TrEMBLA0A0Q3N4Y61e-168A0A0Q3N4Y6_BRADI; Uncharacterized protein
STRINGMLOC_7470.15e-94(Hordeum vulgare)
STRINGLPERR01G39910.11e-93(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-42WRKY DNA-binding protein 49