PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009152200.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 486aa    MW: 53465.2 Da    PI: 8.2238
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009152200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.91e-33228284259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers+ d++v+ei+Y+g+H he
  XP_009152200.1 228 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSQ-DGQVTEIIYKGQHSHE 284
                     8****************************************.***************8 PP
2WRKY105.82.3e-33386444159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  XP_009152200.1 386 LDDGFRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAANDPKAVVTTYEGKHNHD 444
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-29218286IPR003657WRKY domain
PROSITE profilePS5081123.927222286IPR003657WRKY domain
SuperFamilySSF1182907.45E-26225286IPR003657WRKY domain
SMARTSM007741.6E-36227285IPR003657WRKY domain
PfamPF031067.5E-26228283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-36371446IPR003657WRKY domain
SuperFamilySSF1182901.29E-29378446IPR003657WRKY domain
PROSITE profilePS5081137.757381446IPR003657WRKY domain
SMARTSM007744.4E-39386445IPR003657WRKY domain
PfamPF031064.0E-26387444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MADKEEQEVE HQQKQPLTSK SSTGGSSRPT ISLPPRPFGE MFFSGGLGFS PGPMTLVSNL  60
FSDPDELKTF SQLLAGAMAS PVAAVVATAH QTPVSSVGGS GGDVDPRFKQ NRPTGLMIAQ  120
PPAMFTVPPG LSPATLLDSP SFFGLFSPIQ GSFGMTHQQA LAQVTAQAVQ GNTSVQSQSE  180
HPSSTQQQQE TSSEPMSQLP APAQRDTVEV SVYEHRSSQP QSADKPADDG YNWRKYGQKQ  240
VKGSDFPRSY YKCTHPACPV KKKVERSQDG QVTEIIYKGQ HSHEPPQNKT KRDNNGSSRS  300
SDVATQFQTS NTAGLNKNKR DQETSQVTTT TTEQMCEASD SEETSVEPDP KRRNMEVRVT  360
EPVTSTQRTV TEPRIIVQTT SEVDLLDDGF RWRKYGQKVV KGNPYPRSYY KCTTPGCGVR  420
KHVERAANDP KAVVTTYEGK HNHDVPAARN SSHQLRPNNN LHNTTMDSMN QEQRVARLRL  480
KEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-44228447878Probable WRKY transcription factor 4
2lex_A1e-44228447878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.165240.0flower| seed| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009152200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465660.0KC246566.1 Brassica napus WRKY transcription factor 3.2 (WRKY3.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009152200.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLM4E7M40.0M4E7M4_BRARP; Uncharacterized protein
STRINGBra024780.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]