PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009152152.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 257aa MW: 29408.3 Da PI: 8.9765 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.9 | 4.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++gklye++s XP_009152152.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 82.2 | 1.2e-27 | 82 | 174 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++++ ++ +q++ +Lk+++e Lq++qRhllGe++ + + eL+qLe+q+++sl++iRs+K + +l+q+++l+ ke++l e+n++L++klee XP_009152152.1 82 NQSAKDLQERYQDYLNLKSRVEVLQHSQRHLLGEEIAWMGVDELEQLERQVDTSLRQIRSTKARSMLDQLSDLKSKEEMLLETNRDLKRKLEE 174 3678899***********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.7E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.249 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.17E-44 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.03E-32 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-23 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.947 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALLIFSN RGKLYEFCSS 60 PSGMAKMVEK YRKHSYATMD PNQSAKDLQE RYQDYLNLKS RVEVLQHSQR HLLGEEIAWM 120 GVDELEQLER QVDTSLRQIR STKARSMLDQ LSDLKSKEEM LLETNRDLKR KLEESDATLN 180 QTLWGASSSA EHSQQQQQEG MTSYHANPLS QEVGFFRPLQ GNVALQMSHY NPGMPNASNS 240 ATTSQNVING FFPGWMV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 2e-21 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-21 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-21 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-21 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial vegetative organs and flowers, but not in roots (PubMed:7632923). Expressed in flower primordia (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:7632923}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00030 | SELEX | Transfer from AT2G03710 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009152152.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ508052 | 0.0 | AJ508052.1 Brassica oleracea var. botrytis mRNA for MADS-box protein AGL3-a (agl3-a gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009152152.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL3 | ||||
Swissprot | P29383 | 1e-153 | AGL3_ARATH; Agamous-like MADS-box protein AGL3 | ||||
TrEMBL | M4E8M0 | 0.0 | M4E8M0_BRARP; Uncharacterized protein | ||||
STRING | Bra025126.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7135 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03710.2 | 1e-155 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|