PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151811.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 309aa    MW: 34936.6 Da    PI: 5.6503
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.47.9e-55201451128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     l pGfrFhPtdeel+++yL++kv ++ +++  +i evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ 
  XP_009151811.1  20 LLPGFRFHPTDEELISHYLRPKVLNTVFSA-VAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVRDRKYPTGLRTNRATRAGYWKATGKDKEIFK- 112
                     579************************999.67***************98999*****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++lvg+kktLvfy+grapkg+kt+Wv+heyrl
  XP_009151811.1 113 EKALVGMKKTLVFYEGRAPKGVKTNWVIHEYRL 145
                     999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-6017170IPR003441NAC domain
PROSITE profilePS5100556.43420170IPR003441NAC domain
PfamPF023656.5E-2922145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDYEVSRTGE IIEDSEQIDL LPGFRFHPTD EELISHYLRP KVLNTVFSAV AIGEVDLNKV  60
EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATRAGY WKATGKDKEI FKEKALVGMK  120
KTLVFYEGRA PKGVKTNWVI HEYRLDGIYA NDNLPVTAKN EWVISRVFQK GADGKKMHLY  180
GLTMLGSGIN QVEPAGLPPL SNVTCFSDQT IVEDKSHISE LKDECNVTML GSSSTHSIPN  240
IGSMLYSDPV FMQDNSSILM MLLDSEETQF KKNIQGFGTA EKELTTSSWH DHGLAGSAGS  300
VEVDCYWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-531717614171NO APICAL MERISTEM PROTEIN
1ut4_B9e-531717614171NO APICAL MERISTEM PROTEIN
1ut7_A9e-531717614171NO APICAL MERISTEM PROTEIN
1ut7_B9e-531717614171NO APICAL MERISTEM PROTEIN
4dul_A9e-531717614171NAC domain-containing protein 19
4dul_B9e-531717614171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Age-dependent accumulation. First observed in young seedlings in cotyledons and regularly in the tip regions of very young leaves. Accumulates strongly in older leaf parts at the senescence onset. In flowers, present in mature organs such as old sepals, petals, old stamens, mature anthers, and pollen grains. Confined to floral organ abscission zone of mature flowers. Also observed in roots. {ECO:0000269|PubMed:21303842}.
UniprotTISSUE SPECIFICITY: Mostly expressed in root cortex, phloem, atrichoblast and quiescent center (QC), and, to a lower extent, in root endodermis, xylem, pericycle, columella and lateral root cap (LRC) (PubMed:16581911). Expressed in roots, cotyledons, very young leaves, senescing leaves, mature flowers and pollen (PubMed:21303842). {ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:21303842}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151811.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382720.0KF738272.1 Brassica napus NAC transcription factor 59 (NAC59.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151811.10.0PREDICTED: NAC domain-containing protein 59
SwissprotQ9LJW31e-148NAC59_ARATH; NAC domain-containing protein 59
TrEMBLA0A3P5Z6270.0A0A3P5Z627_BRACM; Uncharacterized protein
TrEMBLM4E9B80.0M4E9B8_BRARP; Uncharacterized protein
STRINGBra025374.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-151NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]