PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009151811.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 309aa MW: 34936.6 Da PI: 5.6503 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.4 | 7.9e-55 | 20 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 l pGfrFhPtdeel+++yL++kv ++ +++ +i evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_009151811.1 20 LLPGFRFHPTDEELISHYLRPKVLNTVFSA-VAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVRDRKYPTGLRTNRATRAGYWKATGKDKEIFK- 112 579************************999.67***************98999*****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkg+kt+Wv+heyrl XP_009151811.1 113 EKALVGMKKTLVFYEGRAPKGVKTNWVIHEYRL 145 999****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-60 | 17 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.434 | 20 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-29 | 22 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MDYEVSRTGE IIEDSEQIDL LPGFRFHPTD EELISHYLRP KVLNTVFSAV AIGEVDLNKV 60 EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATRAGY WKATGKDKEI FKEKALVGMK 120 KTLVFYEGRA PKGVKTNWVI HEYRLDGIYA NDNLPVTAKN EWVISRVFQK GADGKKMHLY 180 GLTMLGSGIN QVEPAGLPPL SNVTCFSDQT IVEDKSHISE LKDECNVTML GSSSTHSIPN 240 IGSMLYSDPV FMQDNSSILM MLLDSEETQF KKNIQGFGTA EKELTTSSWH DHGLAGSAGS 300 VEVDCYWNF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-53 | 17 | 176 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-53 | 17 | 176 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Age-dependent accumulation. First observed in young seedlings in cotyledons and regularly in the tip regions of very young leaves. Accumulates strongly in older leaf parts at the senescence onset. In flowers, present in mature organs such as old sepals, petals, old stamens, mature anthers, and pollen grains. Confined to floral organ abscission zone of mature flowers. Also observed in roots. {ECO:0000269|PubMed:21303842}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in root cortex, phloem, atrichoblast and quiescent center (QC), and, to a lower extent, in root endodermis, xylem, pericycle, columella and lateral root cap (LRC) (PubMed:16581911). Expressed in roots, cotyledons, very young leaves, senescing leaves, mature flowers and pollen (PubMed:21303842). {ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:21303842}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009151811.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF738272 | 0.0 | KF738272.1 Brassica napus NAC transcription factor 59 (NAC59.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151811.1 | 0.0 | PREDICTED: NAC domain-containing protein 59 | ||||
Swissprot | Q9LJW3 | 1e-148 | NAC59_ARATH; NAC domain-containing protein 59 | ||||
TrEMBL | A0A3P5Z627 | 0.0 | A0A3P5Z627_BRACM; Uncharacterized protein | ||||
TrEMBL | M4E9B8 | 0.0 | M4E9B8_BRARP; Uncharacterized protein | ||||
STRING | Bra025374.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G29035.1 | 1e-151 | NAC domain containing protein 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|