PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151626.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 358aa    MW: 39397.8 Da    PI: 6.1799
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151626.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.62.5e-084686439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htv 39
                     +C++++ ++++  C+d ++ lC++C   +H+g     H+ 
  XP_009151626.1 46 LICERCNAQPASVRCTDERVSLCQNCDWLGHNGatnshHKK 86
                    68*****************************9899997775 PP
2CCT56.59.9e-20301344144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a+ RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  XP_009151626.1 301 RNNAVIRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 344
                     999**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.887147IPR000315B-box-type zinc finger
CDDcd000211.41E-6447No hitNo description
SMARTSM003364.4E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.34389IPR000315B-box-type zinc finger
PfamPF006433.1E-54686IPR000315B-box-type zinc finger
CDDcd000213.25E-54776No hitNo description
SMARTSM003363.54888IPR000315B-box-type zinc finger
PfamPF062039.8E-15301343IPR010402CCT domain
PROSITE profilePS5101714.951301343IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVHCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
TDERVSLCQN CDWLGHNGAT NSHHKKQTIN CYSGCPSSEE LASIWSFCLE LDFSKGGQSA  120
CEQGMGLMTI DEGTGEKKSG GHDVDVDQPG TSSAAQEKST LAKGPGVSED DFCGNLIMDE  180
MDMAFEKYDE LFGTAYNSSK DLFEHGGLES LFEKHEGLIQ GQQPAESNAA SGDSFMTCRT  240
EPIICFSSQP AHSNISFSGA TGEGNNAGDF QDCGVSSMQQ VSKETPLWCP PTAQEISATT  300
RNNAVIRYKE KKKARKFDKR VRYVSRKERA DVRRRVKGRF VKSGEAYDYD PLSPTRSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151626.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151626.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10
RefseqXP_022543524.10.0zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A3P5YXC50.0A0A3P5YXC5_BRACM; Uncharacterized protein
STRINGBra037499.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]