PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009151503.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 316aa MW: 35826.9 Da PI: 7.3414 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 27 | 71 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE+ l++++++ lG++ W+ Ia +++ gRt++++k++w++ XP_009151503.1 27 RGAFSQEEESLIIELHAALGNR-WSQIATRLP-GRTDNEIKNFWNSC 71 89********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.379 | 1 | 21 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.77E-21 | 7 | 80 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-11 | 7 | 33 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.496 | 22 | 76 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-16 | 26 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 27 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.93E-11 | 29 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 34 | 73 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
YDRLGLQRCG KSCRLRWINY LRPDLKRGAF SQEEESLIIE LHAALGNRWS QIATRLPGRT 60 DNEIKNFWNS CLKKKLRRKG IDPTTHKPII SELQHNVIDQ KLTSLNTSEV VKSTASINNP 120 HDQSMVVLSQ PGPWWYPATA TTTTANQNAE FCFSSSTTQT VSDQIVSLIS SMSTSSSPTP 180 MTSNFNPIPN NWELSYCNNT VPSHSNSIYS AFFGNHYKEA TQIMNTNNNN ILLDQHPHQD 240 MKSWAPEILH YTEHNQSSET GFEAEVKPDI AKYYWRSVSS SPSPNESAAT LLHDADVEFY 300 GKNLQKPNIM AFDQRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-21 | 8 | 76 | 40 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009151503.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151503.2 | 0.0 | PREDICTED: transcription factor MYB86-like | ||||
Swissprot | Q8LPH6 | 1e-166 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A397Z1X2 | 0.0 | A0A397Z1X2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D0B2 | 0.0 | M4D0B2_BRARP; Uncharacterized protein | ||||
STRING | Bra009910.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-160 | myb domain protein 86 |