PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151503.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 316aa    MW: 35826.9 Da    PI: 7.3414
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-162771147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg++++eE+ l++++++ lG++ W+ Ia +++ gRt++++k++w++ 
   XP_009151503.1 27 RGAFSQEEESLIIELHAALGNR-WSQIATRLP-GRTDNEIKNFWNSC 71
                     89********************.*********.***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.379121IPR017877Myb-like domain
SuperFamilySSF466893.77E-21780IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-11733IPR009057Homeodomain-like
PROSITE profilePS5129426.4962276IPR017930Myb domain
SMARTSM007176.6E-162674IPR001005SANT/Myb domain
PfamPF002492.9E-152771IPR001005SANT/Myb domain
CDDcd001679.93E-112969No hitNo description
Gene3DG3DSA:1.10.10.601.2E-213473IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
YDRLGLQRCG KSCRLRWINY LRPDLKRGAF SQEEESLIIE LHAALGNRWS QIATRLPGRT  60
DNEIKNFWNS CLKKKLRRKG IDPTTHKPII SELQHNVIDQ KLTSLNTSEV VKSTASINNP  120
HDQSMVVLSQ PGPWWYPATA TTTTANQNAE FCFSSSTTQT VSDQIVSLIS SMSTSSSPTP  180
MTSNFNPIPN NWELSYCNNT VPSHSNSIYS AFFGNHYKEA TQIMNTNNNN ILLDQHPHQD  240
MKSWAPEILH YTEHNQSSET GFEAEVKPDI AKYYWRSVSS SPSPNESAAT LLHDADVEFY  300
GKNLQKPNIM AFDQRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2187640108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151503.20.0PREDICTED: transcription factor MYB86-like
SwissprotQ8LPH61e-166MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A397Z1X20.0A0A397Z1X2_BRACM; Uncharacterized protein
TrEMBLM4D0B20.0M4D0B2_BRARP; Uncharacterized protein
STRINGBra009910.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-160myb domain protein 86