PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009151478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 20960.2 Da PI: 4.5891 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 19 | 67 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++k +g+Wv+eIr+p gk++r++lg++ tae+Aa+a++ a+ l+g XP_009151478.1 19 YRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDVAAIHLRG 67 9******9.**********8...557***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.6E-13 | 18 | 67 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.906 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-36 | 18 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 18 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 19 | 76 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.07E-22 | 19 | 77 | No hit | No description |
PRINTS | PR00367 | 2.0E-10 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MENKNVGQLE QFSVDQVSYR GVRQRKWGKW VSEIREPGKK TRIWLGSYET AEMAAAAYDV 60 AAIHLRGRGT HVNFPELADS FPQPQSSSSE HIQAAAQEAA LLFKPGVSST EADLGSGQGH 120 SRVGLSPDQI QAINEFPLDS PRRGWMQDLE VDDYEELYGR IFGQCDRDEY FEMQQLQSIW 180 DLNCF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-17 | 19 | 80 | 6 | 68 | ATERF1 |
3gcc_A | 8e-17 | 19 | 80 | 6 | 68 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.28767 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009151478.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151478.1 | 1e-137 | PREDICTED: ethylene-responsive transcription factor ERF022-like | ||||
Refseq | XP_013639902.1 | 1e-137 | ethylene-responsive transcription factor ERF022-like | ||||
Swissprot | Q9LQ28 | 9e-94 | ERF22_ARATH; Ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | A0A397ZEP7 | 1e-136 | A0A397ZEP7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D161 | 1e-136 | M4D161_BRARP; Uncharacterized protein | ||||
STRING | Bra010210.1-P | 1e-136 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33760.1 | 9e-95 | ERF family protein |