PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151365.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 273aa    MW: 30937.8 Da    PI: 8.4623
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151365.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.22.8e-3652112262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++k+++cprC+s++tkfCyynny+++qPr+fCkaC+r Wt GG++r vPvG+grrknk++s
  XP_009151365.1  52 PTKIIPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRCWTSGGTMRSVPVGAGRRKNKNNS 112
                     67899*****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3438106IPR003851Zinc finger, Dof-type
PfamPF027017.8E-3055110IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.48456110IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105894IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MQESKDQEIK LFGMKIHLST VLEAEEDGIS AEKNQKETLT DQVEKDKTLK KPTKIIPCPR  60
CNSMETKFCY YNNYNVNQPR HFCKACQRCW TSGGTMRSVP VGAGRRKNKN NSSSSSHNYQ  120
HATISETDGP VLNFTHGDDQ KVSDNRLMHS WPYMWNPGFY PVYPYWNVPM LSSSPNSSPN  180
STLGKHSRDE DETIMPKQSY GSVLVPKTLR VDDPNEAAKS SIWTTLGIKN EVMFKGFDSK  240
KEVKISKEET ETSLVLCANP AALSRSANFH ERL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.316730.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular tissues of cotyledons, leaves and hypocotyls and in stomata. Not detected in roots. {ECO:0000269|PubMed:16002617}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. A flanking TGT sequence contributes to the specificity of binding. Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The DNA-binding ability is not modulated by 'GIGANTEA' but the stability of CDF1 is controlled by the proteasome-dependent pathway. Ubiquitinated by the SCF(ADO3) E3 ubiquitin ligase complex. Binds to the FT promoter in the morning. {ECO:0000269|PubMed:16002617, ECO:0000269|PubMed:19619493, ECO:0000269|PubMed:22628657}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151365.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation at the protein level, but not at the mRNA level. Strongly decreased expression during the dark phase. Accumulates at high levels at the beginning of the day. {ECO:0000269|PubMed:16002617}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895971e-138AC189597.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014E13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151365.10.0PREDICTED: cyclic dof factor 1
SwissprotQ8W1E31e-143CDF1_ARATH; Cyclic dof factor 1
TrEMBLA0A3P5YHY70.0A0A3P5YHY7_BRACM; Uncharacterized protein
STRINGBo3g107650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139791625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62430.11e-139cycling DOF factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Seaton DD, et al.
    Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature.
    Mol. Syst. Biol., 2015. 11(1): p. 776
    [PMID:25600997]
  4. Goralogia GS, et al.
    CYCLING DOF FACTOR 1 represses transcription through the TOPLESS co-repressor to control photoperiodic flowering in Arabidopsis.
    Plant J., 2017. 92(2): p. 244-262
    [PMID:28752516]
  5. Henriques R, et al.
    The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.
    New Phytol., 2017. 216(3): p. 854-867
    [PMID:28758689]