PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009151238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GeBP | ||||||||
Protein Properties | Length: 414aa MW: 44964 Da PI: 4.6035 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 118 | 5.2e-37 | 122 | 220 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 lfqrlw++eDei lL+G++d+ ++++g+s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k +sgke++f+++hdq +f++s+k XP_009151238.1 122 LFQRLWTDEDEIELLRGFLDYvATHRGTSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGKEVVFKSSHDQATFDISRK 216 79*******************8889***99999************************************************************** PP DUF573 95 iWgs 98 iW++ XP_009151238.1 217 IWNQ 220 **85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.5E-33 | 123 | 219 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MSPSDEREAV FSLESPELEE DGSGGGGGGG AGGETDSDEE AVMPEPNAPD EDDDHEYEDL 60 NSPLVSAAAK SSSAATDTVT VALPAGSAVP VSSIPADSDP KWHRTTEIVH LRPPPLDDSR 120 RLFQRLWTDE DEIELLRGFL DYVATHRGTS SHPPDTAPFY EQIKSKLQLE FNKNQLVEKL 180 RRLKKKYRNV MSKFSSGKEV VFKSSHDQAT FDISRKIWNQ TGKIIGFEDN NVMEFEETNG 240 NNAHVEVDSE NVLEKKVTVS SGSRKRPRSR IGKIDEDKAV SLSDGPVPSV NLNENVSAFG 300 EFGDGRNLGG LIEETLKSCV SPLIKEMMNG TTGMMMAAVG GYPGGGGAHA MGVLSPMLMP 360 SVNPLGFGGG GGVGDERWRR QQILELEVYS RRLELVQEQI RATVNELKTM PSGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.11692 | 0.0 | flower |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009151238.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151238.1 | 0.0 | PREDICTED: probable transcription factor At5g28040 | ||||
Swissprot | F4K5T4 | 0.0 | STKLU_ARATH; Probable transcription factor At5g28040 | ||||
TrEMBL | M4D0I8 | 0.0 | M4D0I8_BRARP; Uncharacterized protein | ||||
STRING | Bra009986.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3098 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 1e-172 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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