PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009151157.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 230aa MW: 26017.2 Da PI: 6.5195

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009151157.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15	4.6e-05	19	67	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r ++ rEr R+++N+ f eL + l + ++ Ka+iL +A++++k+ XP_009151157.1 19 KRINKAVRERLKREHLNELFIELADTLEMN----QQNSGKASILCEATKFLKD 67 689999***********************8....4667788899999999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.05E-4	16	67	No hit	No description
PROSITE profile	PS50888	11.28	18	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-7	18	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-11	19	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MENFRMTDYN LSRKGKVPKR INKAVRERLK REHLNELFIE LADTLEMNQQ NSGKASILCE 60 ATKFLKDVFG QIESLRKEQT ALLSESNYLT TERNELKDET SVLETEISRL HSEIEARVNQ 120 SKPDLNTSPT PEYHHQQYPQ LASQFSGLPI FQGAGFQQSS ATPPGATVIL LPMHPDLQTQ 180 DTSDLTGHLQ TQAPTVMYNS SNVSKPCPRY ANAADSWPSR LLGERLRVSE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009151157.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018511750.1	1e-162	PREDICTED: transcription factor bHLH47-like, partial
Swissprot	Q9SN74	1e-115	BH047_ARATH; Transcription factor bHLH47
TrEMBL	A0A398ART2	1e-160	A0A398ART2_BRACM; Uncharacterized protein
TrEMBL	A0A3P5ZI33	1e-159	A0A3P5ZI33_BRACM; Uncharacterized protein
STRING	XP_006404356.1	1e-134	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11720	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-117	bHLH family protein

Publications ? help Back to Top
Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]