PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151073.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 269aa    MW: 30154.2 Da    PI: 6.8686
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3345.1e-11321041388
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     ++  ++p +f+++  g    +  +++  ++g+sW++ l  ++ +++ ++ ++ W eFv++n L  +D+++F++ +++
  XP_009151073.1  32 KSVRIIPEEFVRSAPGA--FEHRVVFSVRWGNSWQLWL--QRDKNGlFMEEEDWDEFVSDNFLGPNDVLLFTHADTM 104
                     355699*****999655..3446***************..88887879999*********************76533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1413112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-1415113IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-1217112No hitNo description
SMARTSM010191.7E-1319114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.98320114IPR003340B3 DNA binding domain
PfamPF023626.5E-932103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-7169256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-6169256IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0046176268IPR003340B3 DNA binding domain
PROSITE profilePS508636.047232268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSGKSVYNLL QDNVSKPRFC KSLSSGETWS SKSVRIIPEE FVRSAPGAFE HRVVFSVRWG  60
NSWQLWLQRD KNGLFMEEED WDEFVSDNFL GPNDVLLFTH ADTMFIEVQI YKQASYHLKE  120
ITSAPLQADP QAEVVTPMPQ TSPPAPAPAS TSGARQAGAH VNNPEQYLSN PSNPFFVKTL  180
GKKIDVLYVS HLVTEKYGLQ FGPHNSTMFY LLPNEKIEAN TKIYGGCACF NGWAAICRKY  240
KLKQGDAVVC ELERSGAVVT AVRLHFPNE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151073.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151073.10.0PREDICTED: B3 domain-containing protein At5g25470-like
RefseqXP_013643746.10.0B3 domain-containing protein At5g25470-like
RefseqXP_013663090.10.0B3 domain-containing protein At5g25470-like
SwissprotQ680D91e-100Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLM4D0440.0M4D044_BRARP; Uncharacterized protein
STRINGBra009842.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25470.21e-100B3 family protein