PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009151068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 27125.9 Da PI: 10.1942 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.2e-19 | 52 | 103 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 ++++GVr++ +g+Wv+eIr+p +r++lg+f taeeAaka+++a+ ++g+ XP_009151068.1 52 KKFRGVRQRQ-WGSWVSEIRHP-----LfkRRVWLGTFNTAEEAAKAYDQAAVIMNGH 103 59*****999.**********7.....335**********************988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.04E-30 | 52 | 111 | No hit | No description |
PROSITE profile | PS51032 | 21.364 | 53 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-31 | 53 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-36 | 53 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-20 | 53 | 111 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.1E-12 | 53 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGRREETINT IECVERTCKK QRVEDNRKKR RISLTENLRT LIIYSIKMVH SKKFRGVRQR 60 QWGSWVSEIR HPLFKRRVWL GTFNTAEEAA KAYDQAAVIM NGHNAKTNFP VIKSNDSDSS 120 DINSLSRSPK WLSEHLNAKL RKNCKDQTPY LTCLRLDNDS SHIGVWQKRA GSKTTQNWVK 180 LVELSDGVNA RAGDVGINKM KKKIDDVEEE DQVAMQMIEE LLNWTCPASA SISGLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 53 | 110 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00527 | DAP | Transfer from AT5G25390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009151068.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151068.1 | 1e-177 | PREDICTED: ethylene-responsive transcription factor SHINE 3 | ||||
Refseq | XP_022543401.1 | 1e-177 | ethylene-responsive transcription factor SHINE 3-like isoform X2 | ||||
Swissprot | Q3E958 | 1e-110 | SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3 | ||||
TrEMBL | A0A397Z1D7 | 1e-139 | A0A397Z1D7_BRACM; Uncharacterized protein | ||||
STRING | Bo7g096000.1 | 1e-135 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM834 | 28 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25390.2 | 1e-95 | ERF family protein |
Publications ? help Back to Top | |||
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