PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151045.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 421aa    MW: 46414.4 Da    PI: 6.1961
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.8e-083583912154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_009151045.1 358 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 391
                     469*****************************87 PP
2ELK28.82.7e-10312333122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_009151045.1 312 ELKHELKQGYKEKIVDIREEIL 333
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-19147191IPR005540KNOX1
PfamPF037901.1E-17150190IPR005540KNOX1
SMARTSM012568.6E-27203258IPR005541KNOX2
PfamPF037919.4E-20207257IPR005541KNOX2
SMARTSM011886.1E-4312333IPR005539ELK domain
PROSITE profilePS512139.969312332IPR005539ELK domain
PfamPF037899.8E-7312333IPR005539ELK domain
PROSITE profilePS5007111.726332395IPR001356Homeobox domain
SMARTSM003892.4E-11334399IPR001356Homeobox domain
SuperFamilySSF466895.13E-16334398IPR009057Homeodomain-like
CDDcd000869.10E-12335396No hitNo description
Gene3DG3DSA:1.10.10.603.5E-25339396IPR009057Homeodomain-like
PfamPF059201.2E-17352391IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAFHQNHLSQ DLSFNHFTDQ HQPPPPPPPP QQQQHFQDAA PPNWLNTALL RSDNNFLNLH  60
TTTANATAAS SSDSPSSAAV AANQWLSRSS SFLQRTANNN NNNNAAASVV GDVIDDVTGG  120
GAEQMMSGGE NKNDGGGGEG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP  180
RIDAQLAQSQ HVVAKYSTLG GGGQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM  240
EAGMACGEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV LGFGPLIPTE  300
SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP  360
YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSSS TVLKNKRKSN AGDNSGRERF  420
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12335399872Homeobox protein PKNOX1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.204301e-152bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151045.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529660.0AK352966.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151045.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0D3DCW50.0A0A0D3DCW5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ESQ10.0A0A3P6ESQ1_BRAOL; Uncharacterized protein
STRINGBo7g096160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]