PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009151043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26829.5 Da PI: 9.6433 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 51 | 99 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +++GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + XP_009151043.1 51 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 99 69******9.**********8.....334**********************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.11E-35 | 50 | 110 | No hit | No description |
SMART | SM00380 | 8.1E-41 | 51 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.719 | 51 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-20 | 51 | 110 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-10 | 51 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-33 | 51 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MKPTVLKATL HSSNNTFHHF PLLHFPTNTL IDKHTGTYLT PNILMARPQQ RFRGVRQRHW 60 GSWVSEIRHP LLKTRIWLGT FETAEDAARA YDEAARLMCG PRARTNFPYN PNAVPSSSSK 120 LLSATLTAKL HKCYMASLHL TKQTQTQSQA QAQNPRLRSL SLPDTDSVMN MTAGGNHYDR 180 GGGVTETMKE IKWEDGNANL QQSFKPLEED HIEQMIEELR HYGSIEFCSV LPTRSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-17 | 50 | 113 | 4 | 68 | ATERF1 |
3gcc_A | 3e-17 | 50 | 113 | 4 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009151043.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045659 | 1e-100 | AY045659.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds. | |||
GenBank | AY059664 | 1e-100 | AY059664.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151043.1 | 1e-180 | PREDICTED: ethylene-responsive transcription factor ERF003 | ||||
Refseq | XP_013647231.1 | 1e-180 | ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 2e-98 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A397Z8I3 | 1e-143 | A0A397Z8I3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D026 | 1e-143 | M4D026_BRARP; Uncharacterized protein | ||||
STRING | Bra009824.1-P | 1e-144 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 4e-77 | ERF family protein |
Publications ? help Back to Top | |||
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