PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150825.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 226aa    MW: 25427.7 Da    PI: 5.6023
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.15e-1129774096
                    ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    d s ++Wev    +++    +lt+GWk+F  a++Lk gD v+Fkl+g++ f  +v+ 
  XP_009150825.1 29 DASDQTWEVIQ--EGR----TLTGGWKDFTTAHDLKIGDLVIFKLEGDMVF--HVTS 77
                    35667777766..444....59************************99999..7765 PP
2B357.52.4e-181332003299
                     --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +k ++l +++g+sW+ +l+++  +g+y++t+GW++F+++n+ + gD +vF l+g+ ++++++ v+ +
  XP_009150825.1 133 ADKLMILVNKEGNSWTANLRFSEAGGMYYITRGWEKFCRDNRCDIGDLFVFNLVGDGKTTPLLCVCPE 200
                     456899**************************************************9999**999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.223181IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-14383IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-9778No hitNo description
SMARTSM010195.1E-8981IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-142288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-16121192IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.1E-10122201IPR003340B3 DNA binding domain
PfamPF023625.5E-17130200IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-14131197IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.942137201IPR003340B3 DNA binding domain
CDDcd100172.22E-12137189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MANPHEPYFF KPLLPGFHSG VKTWKLRSDA SDQTWEVIQE GRTLTGGWKD FTTAHDLKIG  60
DLVIFKLEGD MVFHVTSFGS SCCELQYTHP HIIKEEADAG DADDNEIRGT WAMSSFSFDY  120
CFLAEVTASN LKADKLMILV NKEGNSWTAN LRFSEAGGMY YITRGWEKFC RDNRCDIGDL  180
FVFNLVGDGK TTPLLCVCPE SKECSELLSK HLSRKRGDIA SSSRVN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150825.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894641e-121AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022548459.11e-146B3 domain-containing protein REM17-like
TrEMBLA0A397Z1521e-160A0A397Z152_BRACM; Uncharacterized protein
STRINGBra022287.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.15e-47B3 family protein